Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0353
         (610 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    27   0.19 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   7.1  
AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate r...    21   9.4  
AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phospha...    21   9.4  

>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 26.6 bits (56), Expect = 0.19
 Identities = 14/34 (41%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = -2

Query: 588 SLLKICLSHITCR-RHKNNYFLAGFLVASWCALF 490
           SL  I L H   + + K+N F+   L AS C+LF
Sbjct: 258 SLTNIQLEHFEMKIKRKHNVFVNNILAASACSLF 291



 Score = 25.0 bits (52), Expect = 0.58
 Identities = 11/23 (47%), Positives = 13/23 (56%)
 Frame = -2

Query: 576 ICLSHITCRRHKNNYFLAGFLVA 508
           IC S I  R H   Y + GFL+A
Sbjct: 144 ICTSGIVGRTHTVGYIIIGFLLA 166


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 22.6 bits (46), Expect = 3.1
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -3

Query: 188 ICCLGTPLPGPSTSARVWSITSTTLTNF 105
           I CL  P PG S ++    +    L+N+
Sbjct: 5   ISCLVAPFPGASANSEAKRLYDDLLSNY 32


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 7.1
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = -1

Query: 547 TQKQLLLSWFFGRFLVRTFFAAALGIFFL 461
           T+K  L+S ++G  +    FA+AL +  L
Sbjct: 269 TEKTPLISLYYGVSICLVTFASALAVVTL 297


>AY331183-1|AAP94623.1|  953|Apis mellifera NMDA-type glutamate
           receptor 1 protein.
          Length = 953

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 14/53 (26%), Positives = 23/53 (43%)
 Frame = -1

Query: 475 GIFFLPKVPARAAFTFKLLNTAVLARFLLTRAAVNLNLS*SVICARFSLFANF 317
           GI  L K P+R++     L       ++L   +V++      +  RFS F  F
Sbjct: 543 GITILEKKPSRSSTLVSFLQPFSNTLWILVMVSVHVVALVLYLLDRFSPFGRF 595


>AF023666-1|AAC14552.1|  363|Apis mellifera sn-glycerol-3-phosphate
           dehydrogenase protein.
          Length = 363

 Score = 21.0 bits (42), Expect = 9.4
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 192 LKPTPSHKIPPQI 230
           +K  P HK+PP I
Sbjct: 62  VKYLPGHKLPPNI 74



 Score = 21.0 bits (42), Expect = 9.4
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = +1

Query: 262 KRGQMLNSMKNGQKVNGP 315
           K  ++   M NGQK+ GP
Sbjct: 284 KISELEKEMLNGQKLQGP 301


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 164,084
Number of Sequences: 438
Number of extensions: 3267
Number of successful extensions: 8
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17971191
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)