Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0353
(610 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B) ribo... 58 6e-09
At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A) 57 8e-09
At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR... 30 1.4
At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR... 29 1.8
At5g54830.1 68418.m06829 DOMON domain-containing protein / dopam... 29 2.4
At5g15890.1 68418.m01859 expressed protein 29 3.2
At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) simila... 28 4.2
At5g02840.2 68418.m00227 myb family transcription factor contain... 28 5.6
At5g02840.1 68418.m00226 myb family transcription factor contain... 28 5.6
At2g19970.1 68415.m02335 pathogenesis-related protein, putative ... 28 5.6
At1g47710.1 68414.m05302 serpin, putative / serine protease inhi... 28 5.6
At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT... 27 7.4
At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) simila... 27 7.4
At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) simila... 27 7.4
At1g09770.1 68414.m01096 myb family transcription factor contain... 27 7.4
At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4) f... 27 9.7
>At4g27090.1 68417.m03894 60S ribosomal protein L14 (RPL14B)
ribosomal protein L14 - Human,PIR3:JC5954
Length = 134
Score = 57.6 bits (133), Expect = 6e-09
Identities = 33/58 (56%), Positives = 38/58 (65%)
Frame = +1
Query: 40 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 213
M F RYVE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ +L LT
Sbjct: 1 MGFKRYVEIGRVALVNYGEDHGKLVVIVDVVDQNRALVDAP--DMERIQMNFKRLSLT 56
Score = 46.4 bits (105), Expect = 1e-05
Identities = 17/45 (37%), Positives = 30/45 (66%)
Frame = +3
Query: 261 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 395
+A A + KW +S W +KL +++RA + D+DRFK+ A++K+
Sbjct: 73 EAMEKADVKNKWEKSSWGRKLIVQKRRANLNDFDRFKIMLAKIKK 117
>At2g20450.1 68415.m02387 60S ribosomal protein L14 (RPL14A)
Length = 134
Score = 57.2 bits (132), Expect = 8e-09
Identities = 33/58 (56%), Positives = 39/58 (67%)
Frame = +1
Query: 40 MPFARYVEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLT 213
M F R+VE GRVALV G GKLV +VDV+DQ RALVD P + R Q+ L +L LT
Sbjct: 1 MGFKRFVEIGRVALVNYGEDYGKLVVIVDVVDQNRALVDAP--DMERIQMNLKRLSLT 56
Score = 47.2 bits (107), Expect = 8e-06
Identities = 18/45 (40%), Positives = 30/45 (66%)
Frame = +3
Query: 261 KAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKR 395
+A A + KW +S W +KL +++RA + D+DRFK+ A++KR
Sbjct: 73 EAMEKADVKNKWEKSSWGRKLIVQKRRAALNDFDRFKIMLAKIKR 117
>At5g44870.1 68418.m05501 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1170
Score = 29.9 bits (64), Expect = 1.4
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 189 PLKPTPSHKIPPQ-IRVHSPYSSVRKAWTDAKLNE--KWTESQWAQKLANKEKRAQMTDY 359
P + PS P + + PYSS++K W K KW ++ KL N + +
Sbjct: 667 PWEKLPSDFNPENLVDLELPYSSIKKVWEGVKDTPILKWANLSYSSKLTNLLGLSNAKNL 726
Query: 360 DRFKL 374
+R L
Sbjct: 727 ERLNL 731
>At4g19530.1 68417.m02873 disease resistance protein (TIR-NBS-LRR
class), putative domain signature TIR-NBS-LRR exists,
suggestive of a disease resistance protein.
Length = 1167
Score = 29.5 bits (63), Expect = 1.8
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 189 PLKPTPSHKIPPQ-IRVHSPYSSVRKAWTDAKLNEK--WTESQWAQKLANKEKRAQMTDY 359
P P IP + + PYS +R+ W + K K W + + KL N +Q +
Sbjct: 631 PKDELPQDFIPKNLVDLKLPYSKIRQIWREEKDAPKLRWVDLNHSSKLENLSGLSQALNL 690
Query: 360 DRFKL 374
+R L
Sbjct: 691 ERLNL 695
>At5g54830.1 68418.m06829 DOMON domain-containing protein / dopamine
beta-monooxygenase N-terminal domain-containing protein
contains Pfam PF03351: DOMON domain
Length = 907
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/47 (29%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = +3
Query: 183 TDPLKPTPSHKIPPQIR-VHSPYSSVRKAWTDAKLNEKWTESQWAQK 320
T PLKP+ SH+ P+ + + P + ++ W + KWT+ Q ++
Sbjct: 613 TRPLKPSCSHRDRPECKNMIDPTTPLKVIWA---MGAKWTDGQLTER 656
>At5g15890.1 68418.m01859 expressed protein
Length = 526
Score = 28.7 bits (61), Expect = 3.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -3
Query: 164 PGPSTSARVWSITSTTLTNFPFKGPSATRATRP 66
P P T +VW+ TS T P +AT+P
Sbjct: 286 PSPDTDFKVWNYTSYNFTLHVMWSPFLVKATKP 318
>At1g18540.1 68414.m02313 60S ribosomal protein L6 (RPL6A) similar
to 60S ribosomal protein L6 GI:7208784 from [Cicer
arietinum]
Length = 233
Score = 28.3 bits (60), Expect = 4.2
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 58 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 210
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKINGVPLR--RVNQAYV 139
>At5g02840.2 68418.m00227 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 240 SPYSSVRKAWTDAKLNEKWTESQ 308
+P VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At5g02840.1 68418.m00226 myb family transcription factor contains
PFAM profile: PF00249 myb-like DNA binding domain
Length = 293
Score = 27.9 bits (59), Expect = 5.6
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = +3
Query: 240 SPYSSVRKAWTDAKLNEKWTESQ 308
+P VRKA+T K E WTE +
Sbjct: 33 APEKKVRKAYTITKSRESWTEGE 55
>At2g19970.1 68415.m02335 pathogenesis-related protein, putative
similar to pathogenesis-related protein 1 {Arabidopsis
thaliana} GI:166805; contains Pfam profile PF00188:
SCP-like extracellular protein
Length = 177
Score = 27.9 bits (59), Expect = 5.6
Identities = 20/71 (28%), Positives = 33/71 (46%)
Frame = +3
Query: 159 TRQWST*ATDPLKPTPSHKIPPQIRVHSPYSSVRKAWTDAKLNEKWTESQWAQKLANKEK 338
TR + P+K K ++VH+ +R A A L T + +AQK AN++
Sbjct: 19 TRAYGLPRVRPIKDVQPRKT---LKVHN---QIRAAVGVAPLKWNKTVAAYAQKFANRQA 72
Query: 339 RAQMTDYDRFK 371
+A + DY +
Sbjct: 73 KAGVCDYSSMR 83
>At1g47710.1 68414.m05302 serpin, putative / serine protease
inhibitor, putative similar to phloem serpin-1
[Cucurbita maxima] GI:9937311; contains Pfam profile
PF00079: Serpin (serine protease inhibitor)
Length = 391
Score = 27.9 bits (59), Expect = 5.6
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +1
Query: 109 LVSVVDVIDQTRALVDGPGSGVPRQQIRLNQLHLTKFRLKYAFTAPTRL*G 261
L ++D I T +D + +PR+Q+++ + + KF+ + F A L G
Sbjct: 247 LSDLLDKIVSTPGFLD---NHIPRRQVKVREFKIPKFKFSFGFDASNVLKG 294
>At5g25220.1 68418.m02990 homeobox protein knotted-1 like 3 (KNAT3)
identical to homeobox protein knotted-1 like 3 (KNAT3)
SP:P48000 from [Arabidopsis thaliana]
Length = 431
Score = 27.5 bits (58), Expect = 7.4
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = -3
Query: 128 TSTTLTNFPFKGPSATRATRPGSTYRAKGMTFLQRLNTNN 9
T+ T T PS+ A + + ++ +FLQR N NN
Sbjct: 69 TANTTTASSSDSPSSAAAAAAANQWLSRSSSFLQRNNNNN 108
>At1g74060.1 68414.m08578 60S ribosomal protein L6 (RPL6B) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 58 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 210
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g74050.1 68414.m08576 60S ribosomal protein L6 (RPL6C) similar
to 60S ribosomal protein L6 (YL 16 like) GB:CAB57309
from [Cyanophora paradoxa]
Length = 233
Score = 27.5 bits (58), Expect = 7.4
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
Frame = +1
Query: 58 VEPGRVALVADGPLKGKLVSVVDVIDQTRALVDGPG--SGVPRQQIRLNQLHL 210
+ PG V ++ G KGK V + + LV GP +GVP + R+NQ ++
Sbjct: 89 ITPGTVLIILAGRFKGKRVVFLKQLASGLLLVTGPFKINGVPLR--RVNQAYV 139
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 27.5 bits (58), Expect = 7.4
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 252 SVRKAWTDAKLNEKWTESQWAQKLANKEKRAQMTDYDRFKLTAARVKRNRARTAVFKSLK 431
+VRK + + + ++++ E+RA+ T + + + T + + FK+LK
Sbjct: 699 NVRKKMEEDEKKAEHMKAKYKTYTKGHERRAE-TVWTQIEATLKQAEIGGTEVECFKALK 757
Query: 432 VKAARAGTFGKKNI 473
+ A +F KKN+
Sbjct: 758 RQEEMAASFRKKNL 771
>At5g09240.2 68418.m01062 transcriptional coactivator p15 (PC4)
family protein similar to SP|P11031 Activated RNA
polymerase II transcriptional coactivator p15 precursor
(PC4) (p14) (Single-stranded DNA binding protein p9)
{Mus musculus}; contains Pfam profile PF02229:
Transcriptional Coactivator p15 (PC4)
Length = 138
Score = 27.1 bits (57), Expect = 9.7
Identities = 11/17 (64%), Positives = 11/17 (64%)
Frame = +2
Query: 8 HCLC*DVVRTSCLLHGT 58
HCLC V SCLLH T
Sbjct: 96 HCLCLPHVHMSCLLHET 112
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,470,803
Number of Sequences: 28952
Number of extensions: 252849
Number of successful extensions: 771
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 771
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1216725696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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