Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0350
         (521 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B) cont...   113   7e-26
At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S ...   109   8e-25
At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C) cont...   106   8e-24
At5g43000.1 68418.m05244 hypothetical protein                          30   0.82 
At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containi...    28   3.3  
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein...    28   3.3  
At5g36210.1 68418.m04365 expressed protein                             27   5.8  
At5g34930.1 68418.m04119 arogenate dehydrogenase identical to ar...    27   7.7  

>At5g41520.1 68418.m05044 40S ribosomal protein S10 (RPS10B)
           contains similarity to 40S ribosomal protein S10
          Length = 180

 Score =  113 bits (272), Expect = 7e-26
 Identities = 47/80 (58%), Positives = 64/80 (80%)
 Frame = +1

Query: 13  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 192
           M++ + NR  I +YLFKEGV+ AKKD++ P+H  +E +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISETNRREISKYLFKEGVLFAKKDFNLPQHPLIESVPNLQVIKLMQSFKSKEYVRETF 60

Query: 193 AWRHFYWYLTNEGIEYLRIF 252
           AW H+YW+LTNEGI++LR +
Sbjct: 61  AWMHYYWFLTNEGIDFLRTY 80



 Score = 35.9 bits (79), Expect = 0.017
 Identities = 33/91 (36%), Positives = 39/91 (42%), Gaps = 6/91 (6%)
 Frame = +3

Query: 228 GY*ILENILHLPPEIVPATLKRSVRTETVRRGPVG-RPDAPARS-----AEDRSAYRRTP 389
           G   L   L+LP EIVPATLK+  +      G  G RP  P R        DR  YR  P
Sbjct: 73  GIDFLRTYLNLPSEIVPATLKKQQKPLGRPFGGGGDRPRGPPRGDGERRFGDRDGYRGGP 132

Query: 390 AAPGVAPHDKKADVGPGSADLEFKGGYGRGR 482
            + G   +  KA   P      F+GG G  R
Sbjct: 133 KSGG--EYGDKAG-APADYQPGFRGGAGGAR 160


>At4g25740.1 68417.m03706 40S ribosomal protein S10 (RPS10A) 40S
           ribosomal protein S10 - Lumbricus rubellus, PID:e1329701
          Length = 177

 Score =  109 bits (263), Expect = 8e-25
 Identities = 48/80 (60%), Positives = 63/80 (78%)
 Frame = +1

Query: 13  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 192
           M++ + NR  I +YLFKEGV  AKKD++ PKH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISENNRREICKYLFKEGVCFAKKDFNLPKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 193 AWRHFYWYLTNEGIEYLRIF 252
           AW H+YW+LTNEGIE+LR +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTY 79



 Score = 37.1 bits (82), Expect = 0.007
 Identities = 31/86 (36%), Positives = 39/86 (45%), Gaps = 3/86 (3%)
 Frame = +3

Query: 228 GY*ILENILHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSAEDRSAY-RRTPAAP 398
           G   L   L+LP ++VPATLK+S +       GP G R   P RS  DR  +  R     
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRQRGPPRSDGDRPRFGDRDGYRG 131

Query: 399 GVAPHDKKADVGPGSADLEFKGGYGR 476
           G    D+K    P      F+GG GR
Sbjct: 132 GPRGGDEKGG-APADFQPSFQGGGGR 156


>At5g52650.1 68418.m06536 40S ribosomal protein S10 (RPS10C)
           contains similarity to 40S ribosomal protein S10
          Length = 179

 Score =  106 bits (255), Expect = 8e-24
 Identities = 47/80 (58%), Positives = 62/80 (77%)
 Frame = +1

Query: 13  MLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKHTELEKIPNLQVIKAMQSLKSRGYVKEQF 192
           M++ + NR  I +YLFKEGV  AKKD++  KH  ++ +PNLQVIK MQS KS+ YV+E F
Sbjct: 1   MIISEANRKEICKYLFKEGVCFAKKDFNLAKHPLID-VPNLQVIKLMQSFKSKEYVRETF 59

Query: 193 AWRHFYWYLTNEGIEYLRIF 252
           AW H+YW+LTNEGIE+LR +
Sbjct: 60  AWMHYYWFLTNEGIEFLRTY 79



 Score = 33.9 bits (74), Expect = 0.067
 Identities = 32/95 (33%), Positives = 40/95 (42%), Gaps = 11/95 (11%)
 Frame = +3

Query: 228 GY*ILENILHLPPEIVPATLKRSVRT-ETVRRGPVG-RPDAPARSA------EDRSAYRR 383
           G   L   L+LP ++VPATLK+S +       GP G R   P           DR  YR 
Sbjct: 72  GIEFLRTYLNLPSDVVPATLKKSAKPGGRPFGGPPGDRSRGPRHEGGDRPRFGDRDGYRA 131

Query: 384 TPAAPGVAPHDKKADVGPGSADLEFKG---GYGRG 479
            P A G    +K     P      F+G   G+GRG
Sbjct: 132 GPRAGGEFGGEKGG--APADYQPSFQGSGRGFGRG 164


>At5g43000.1 68418.m05244 hypothetical protein 
          Length = 282

 Score = 30.3 bits (65), Expect = 0.82
 Identities = 14/44 (31%), Positives = 23/44 (52%), Gaps = 3/44 (6%)
 Frame = +1

Query: 208 YWYLTNEGIEYLRIFFTFLLKLCLQHL---SAQYVQRQYAVALL 330
           +W  TN+G  Y      +LL LC+ H+   +  YV  ++ + LL
Sbjct: 81  FWLYTNDGSLYWHTLNAYLLMLCIVHVIGSTISYVSHKHYLVLL 124


>At3g16610.1 68416.m02123 pentatricopeptide (PPR) repeat-containing
           protein contains Pfam profile PF01535: PPR repeat
          Length = 654

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = +1

Query: 118 EKIPNLQVIKAMQSLKSRGYVKEQFAWR--HFYWYLTNEGIEYLRIFFTFLLKLC 276
           ++IP+ ++      L  R Y    FA +    Y+ + N G+   +  + F+LK C
Sbjct: 59  DEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKAC 113


>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
           contains Pfam PF02365: No apical meristem (NAM) domain;
           similar to NAC domain protein NAM GB: AAD17313
           GI:4325282 from [Arabidopsis thaliana]
          Length = 429

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/30 (33%), Positives = 20/30 (66%)
 Frame = +1

Query: 100 PKHTELEKIPNLQVIKAMQSLKSRGYVKEQ 189
           P HT ++ IP+L +I+ + + K++   K+Q
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQ 362


>At5g36210.1 68418.m04365 expressed protein
          Length = 676

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 14/33 (42%), Positives = 21/33 (63%)
 Frame = +1

Query: 10  KMLMPKQNRVAIYEYLFKEGVMVAKKDYHAPKH 108
           K++ P Q+R  IYE L K+G+ VA  +Y   +H
Sbjct: 603 KVVTPDQSR-KIYEALKKKGLPVALVEYEGEQH 634


>At5g34930.1 68418.m04119 arogenate dehydrogenase identical to
           arogenate dehydrogenase GI:16903098 from [Arabidopsis
           thaliana]; contains Pfam profile: PF02153: prephenate
           dehydrogenase
          Length = 640

 Score = 27.1 bits (57), Expect = 7.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = -3

Query: 105 LRCMIVFFGHHDSLFKEVLINSNTVLFGH 19
           LR  I+ FG++     E LI+   +LF H
Sbjct: 53  LRIAIIGFGNYGQFLAETLISQGHILFAH 81


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,676,881
Number of Sequences: 28952
Number of extensions: 204483
Number of successful extensions: 567
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 546
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 565
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 957410176
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)