Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0349
         (585 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q88TL0 Cluster: Lipoprotein; n=1; Lactobacillus plantar...    33   6.6  
UniRef50_Q17551 Cluster: E3 ubiquitin-protein ligase rpm-1; n=3;...    33   6.6  

>UniRef50_Q88TL0 Cluster: Lipoprotein; n=1; Lactobacillus
           plantarum|Rep: Lipoprotein - Lactobacillus plantarum
          Length = 157

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 22/61 (36%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
 Frame = +2

Query: 71  LLTACHRIGPRATRTVRPSAVCLSLVPSVAQRD---REDAARSRITLSLISNYVCIYMHC 241
           LLT CH      T TV+P+   +S V SV  RD   R  +AR  ++L L +N+   +   
Sbjct: 16  LLTGCHSATDTQTPTVQPATSKVSAVRSVTTRDFLGRWVSARPAMSLYLSTNHQVAWFRR 75

Query: 242 G 244
           G
Sbjct: 76  G 76


>UniRef50_Q17551 Cluster: E3 ubiquitin-protein ligase rpm-1; n=3;
            Caenorhabditis|Rep: E3 ubiquitin-protein ligase rpm-1 -
            Caenorhabditis elegans
          Length = 3766

 Score = 32.7 bits (71), Expect = 6.6
 Identities = 26/94 (27%), Positives = 38/94 (40%)
 Frame = -2

Query: 365  LLNHLNIKXXXFTTLNXXNNSMRXIYIYXFXSSDRRNXSTLHSAYIYIHSSI*GIV*CES 186
            LL H N +     +L    N +R +Y   F  +   N S+L  A +   S    I   ++
Sbjct: 1433 LLKHFNCEKETLASLTSFPNILRFLYDQTFMRNAYENTSSLAEAILVKVSRDLAIPTDDT 1492

Query: 185  APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGD 84
               P+ H    +     RRRSA P    +D C D
Sbjct: 1493 LMGPVVHQTSSRF----RRRSAQPTWDMSDGCAD 1522


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 451,863,864
Number of Sequences: 1657284
Number of extensions: 7059621
Number of successful extensions: 17691
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 17201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17684
length of database: 575,637,011
effective HSP length: 96
effective length of database: 416,537,747
effective search space used: 40820699206
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)