Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0349
         (585 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa...    27   1.5  
SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual     26   4.7  
SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb...    25   6.2  

>SPAC23C4.19 |spt5||transcription elongation factor
           Spt5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = -1

Query: 147 TSDRQTALGRTVRVARGPMR 88
           T  R  A+G TVR+ RGPM+
Sbjct: 723 TIGRDKAIGATVRIRRGPMK 742


>SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 815

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -2

Query: 290 YIYXFXSSDRRNXSTLHSAYIYIHSS 213
           Y+Y F  +D R+  +LH   +Y  SS
Sbjct: 662 YLYHFGRTDHRHNFSLHHLNLYYESS 687


>SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1778

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = +2

Query: 74   LTACHRIGPRATRTVRPSAVCLSLVPSV 157
            L+  H   PR++ TV+P ++C S   S+
Sbjct: 1244 LSGTHAASPRSSMTVKPLSLCSSGYESI 1271


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,838,634
Number of Sequences: 5004
Number of extensions: 28150
Number of successful extensions: 51
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 51
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)