BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0349 (585 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosa... 27 1.5 SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual 26 4.7 SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pomb... 25 6.2 >SPAC23C4.19 |spt5||transcription elongation factor Spt5|Schizosaccharomyces pombe|chr 1|||Manual Length = 990 Score = 27.5 bits (58), Expect = 1.5 Identities = 11/20 (55%), Positives = 14/20 (70%) Frame = -1 Query: 147 TSDRQTALGRTVRVARGPMR 88 T R A+G TVR+ RGPM+ Sbjct: 723 TIGRDKAIGATVRIRRGPMK 742 >SPBC13E7.05 |gpi14||pig-M|Schizosaccharomyces pombe|chr 2|||Manual Length = 815 Score = 25.8 bits (54), Expect = 4.7 Identities = 10/26 (38%), Positives = 15/26 (57%) Frame = -2 Query: 290 YIYXFXSSDRRNXSTLHSAYIYIHSS 213 Y+Y F +D R+ +LH +Y SS Sbjct: 662 YLYHFGRTDHRHNFSLHHLNLYYESS 687 >SPAC1486.05 |nup189||nucleoporin Nup189|Schizosaccharomyces pombe|chr 1|||Manual Length = 1778 Score = 25.4 bits (53), Expect = 6.2 Identities = 10/28 (35%), Positives = 17/28 (60%) Frame = +2 Query: 74 LTACHRIGPRATRTVRPSAVCLSLVPSV 157 L+ H PR++ TV+P ++C S S+ Sbjct: 1244 LSGTHAASPRSSMTVKPLSLCSSGYESI 1271 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,838,634 Number of Sequences: 5004 Number of extensions: 28150 Number of successful extensions: 51 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 50 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 51 length of database: 2,362,478 effective HSP length: 69 effective length of database: 2,017,202 effective search space used: 252150250 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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