Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0349
         (585 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

08_02_1290 - 25927667-25928950                                         31   0.68 
10_06_0028 - 9802362-9802475,9802919-9803090,9803167-9803208,980...    29   2.7  
08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544     28   6.3  
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042...    27   8.3  

>08_02_1290 - 25927667-25928950
          Length = 427

 Score = 31.1 bits (67), Expect = 0.68
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 185 APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGDKR*EAYT 63
           APR +G +A   +LV  RR  A P G+R D  G  R +  T
Sbjct: 384 APRQVGAIAGGAQLVGQRRGRAAPTGARDDDDGGVRLQKQT 424


>10_06_0028 -
           9802362-9802475,9802919-9803090,9803167-9803208,
           9803344-9804011,9804098-9804418,9804495-9804833,
           9804856-9805109,9805300-9805510
          Length = 706

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +1

Query: 103 RDPHGPAERRLSVTSSFCCAT*PRGRGALSHHTIP 207
           R  H P +RR S TS+   A  P G  A+ H T P
Sbjct: 343 RVEHNPTQRRSSCTSTEAPAEQPEGPAAVDHITEP 377


>08_02_0421 - 16932354-16932427,16932909-16933076,16933443-16934544
          Length = 447

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +2

Query: 440 RPDTXXGATSRPXSAARRHPIIPYNCFRVHS 532
           RPD   G+ S   +AA R P+  Y C   HS
Sbjct: 307 RPDAGSGSGSGSCAAASRTPLPSYACRSAHS 337


>11_06_0061 -
           19702893-19703869,19703960-19704098,19704166-19704287,
           19704362-19704416,19704508-19704624,19704718-19705413,
           19706358-19706393,19707190-19708236
          Length = 1062

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 18/62 (29%), Positives = 25/62 (40%)
 Frame = -2

Query: 191 ESAPRPLGHVAQQKELVTDRRRSAGPCGSRADRCGDKR*EAYTTAITHTPGTAPQPLSLR 12
           ES    +G     +E+++D   + G   + A  CG    E Y    T   G     LS R
Sbjct: 489 ESREDGIGKTMVNQEIISDMMLTNGQANTSA--CGTSMNEGYAMLSTKKFGKQKMALSRR 546

Query: 11  YN 6
           YN
Sbjct: 547 YN 548


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,328,763
Number of Sequences: 37544
Number of extensions: 200560
Number of successful extensions: 537
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 533
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)