Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0349
         (585 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of pr...    33   0.20 
AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical ...    33   0.20 

>U53147-6|AAA96117.1| 3766|Caenorhabditis elegans Regulator of
            presynaptic morphologyprotein 1 protein.
          Length = 3766

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 26/94 (27%), Positives = 38/94 (40%)
 Frame = -2

Query: 365  LLNHLNIKXXXFTTLNXXNNSMRXIYIYXFXSSDRRNXSTLHSAYIYIHSSI*GIV*CES 186
            LL H N +     +L    N +R +Y   F  +   N S+L  A +   S    I   ++
Sbjct: 1433 LLKHFNCEKETLASLTSFPNILRFLYDQTFMRNAYENTSSLAEAILVKVSRDLAIPTDDT 1492

Query: 185  APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGD 84
               P+ H    +     RRRSA P    +D C D
Sbjct: 1493 LMGPVVHQTSSRF----RRRSAQPTWDMSDGCAD 1522


>AC024696-9|AAK84508.1| 1900|Caenorhabditis elegans Hypothetical
            protein F07B7.12 protein.
          Length = 1900

 Score = 32.7 bits (71), Expect = 0.20
 Identities = 26/94 (27%), Positives = 38/94 (40%)
 Frame = -2

Query: 365  LLNHLNIKXXXFTTLNXXNNSMRXIYIYXFXSSDRRNXSTLHSAYIYIHSSI*GIV*CES 186
            LL H N +     +L    N +R +Y   F  +   N S+L  A +   S    I   ++
Sbjct: 1393 LLKHFNCEKETLASLTSFPNILRFLYDQTFMRNAYENTSSLAEAILVKVSRDLAIPTDDT 1452

Query: 185  APRPLGHVAQQKELVTDRRRSAGPCGSRADRCGD 84
               P+ H    +     RRRSA P    +D C D
Sbjct: 1453 LMGPVVHQTSSRF----RRRSAQPTWDMSDGCAD 1482


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,401,670
Number of Sequences: 27780
Number of extensions: 166772
Number of successful extensions: 363
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 357
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 363
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)