Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0349
         (585 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /...    29   3.0  
At1g20780.1 68414.m02602 armadillo/beta-catenin repeat protein-r...    27   7.0  

>At1g12770.1 68414.m01482 DEAD/DEAH box helicase family protein /
           pentatricopeptide (PPR) repeat-containing protein
           contains Pfam profiles:  PF00271 helicase conserved
           C-terminal domain, PF01535 PPR repeat, PF00270:
           DEAD/DEAH box helicase
          Length = 1145

 Score = 28.7 bits (61), Expect = 3.0
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +2

Query: 113 TVRPSAVCLSLVPSVAQRDREDAARSRITLSLISNYVCIYMH 238
           TV+PSA  +SL P+ ++ D +     +     + +Y CI  H
Sbjct: 350 TVQPSAPVMSLTPTTSEADGQIQTTIQSLPPALKHYYCISKH 391


>At1g20780.1 68414.m02602 armadillo/beta-catenin repeat
           protein-related / U-box domain-containing protein low
           similarity to immediate-early fungal elicitor protein
           CMPG1 [Petroselinum crispum] GI:14582200; contains Pfam
           profile PF04564: U-box domain
          Length = 801

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 12/43 (27%), Positives = 22/43 (51%)
 Frame = +2

Query: 74  LTACHRIGPRATRTVRPSAVCLSLVPSVAQRDREDAARSRITL 202
           LT+C +  P+    ++ S   +SLV  +  R+ +D   + I L
Sbjct: 427 LTSCPKTVPKVVYAIKTSGAIISLVQFIEVRENDDLRLASIKL 469


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,585,055
Number of Sequences: 28952
Number of extensions: 147724
Number of successful extensions: 314
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 312
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 314
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1151426952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)