Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0348
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ... 28 1.0
SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|... 27 1.8
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 27 3.1
SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|... 26 4.2
SPCC1450.04 |tef5||translation elongation factor EF-1 beta subun... 26 4.2
SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2 |Schizos... 26 4.2
SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr... 25 7.3
SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces... 25 7.3
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom... 25 7.3
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 9.6
>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 28.3 bits (60), Expect = 1.0
Identities = 17/52 (32%), Positives = 24/52 (46%)
Frame = +1
Query: 490 QRCAQYRRTAATSPSGVAC*RLAATPPRTKLSRKTPMFSPATPPSVRANASW 645
+R A + A S GV +L A P TKLS P P + +A A++
Sbjct: 352 ERSAAISKEQAESGEGVEQIQLCAVDPNTKLSITIPEAGSTDPETQKARAAF 403
>SPCC285.07c |wtf18||wtf element Wtf18|Schizosaccharomyces pombe|chr
3|||Manual
Length = 402
Score = 27.5 bits (58), Expect = 1.8
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 412 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYRRTAATSPSGVA 543
I ++KG++P + SE+E T D+++ ++T P+ +A
Sbjct: 24 IDLEKGLLPEYNSEEEGTLPLYSDISKLANPVPEDSSTGPTEIA 67
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 602 NIGVFLDSLVRGGVAANLQHAT 537
NI +FL SL GGVA NL A+
Sbjct: 861 NITIFLVSLKAGGVALNLTEAS 882
>SPCC1906.04 |wtf20||wtf element Wtf20|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/44 (25%), Positives = 24/44 (54%)
Frame = +1
Query: 412 IKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYRRTAATSPSGVA 543
I ++KG++P + SE+E D+++ ++T P+ +A
Sbjct: 24 IDLEKGLLPEYNSEEEGALPPYSDISKLANPVPEDSSTGPTEIA 67
>SPCC1450.04 |tef5||translation elongation factor EF-1 beta subunit
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 214
Score = 26.2 bits (55), Expect = 4.2
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +1
Query: 433 VPLFGSEDECTTQGLDDLAQRCAQYRRTAATSPSGV 540
+ LFGS++E + A+R A+Y + A P V
Sbjct: 91 IDLFGSDEEEDPEAERIKAERVAEYNKKKAAKPKAV 126
>SPAC23C4.12 |hhp2||serine/threonine protein kinase Hhp2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 400
Score = 26.2 bits (55), Expect = 4.2
Identities = 15/60 (25%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 354 LLVKGLVEQDHTRD-VLGEHSVRAE*QLAITTTVPSVFSTPMSCKRLPIVPVDSSAARIP 178
LL++ + D+ D ++ ++ RA A + T P ++PM + P+ P+ + + IP
Sbjct: 277 LLIRKGYQYDYVFDWMILKYQKRAAAAAAASATAPPQVTSPMVSQTQPVNPITPNYSSIP 336
>SPBP4H10.15 |||aconitate hydratase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 905
Score = 25.4 bits (53), Expect = 7.3
Identities = 10/36 (27%), Positives = 23/36 (63%)
Frame = +1
Query: 385 LEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQ 492
L+K+G++P V++ +ED+ +T+G++ L +
Sbjct: 703 LKKQGVLPLTFVNEADYEKIDAEDKVSTRGIEQLLE 738
>SPAC32A11.01 |mug8||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 720
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/51 (23%), Positives = 24/51 (47%)
Frame = +3
Query: 495 LRPVQKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIVA 647
++ K CHF +C LK+ + + A+ N++ ++ + Q I A
Sbjct: 143 MKHATKHSCHFNILKCFLKLLMSLSAKLAVSSNSSTVSSLELVSQIASIWA 193
>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 963
Score = 25.4 bits (53), Expect = 7.3
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +2
Query: 116 PTPELQEELKKIAQAIVAPAKGILAADESTGTMGK 220
P PE ++E K+A++ P K +A ES K
Sbjct: 477 PKPEAKKEASKVAESTKIPKKQHTSAYESRAPQSK 511
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.0 bits (52), Expect = 9.6
Identities = 14/46 (30%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
Frame = -1
Query: 491 WARSSRPWVVHSSSDP-NSGTTPLSTLMPGMMPFFSSRETRGVPSS 357
++ S+ P +S S P +S + P ++ +P FFS + PSS
Sbjct: 87 FSESATPSETNSYSSPVSSYSDPATSQLPSSTSFFSPTSSEYTPSS 132
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,901,597
Number of Sequences: 5004
Number of extensions: 62436
Number of successful extensions: 172
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 172
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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