Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0348
         (656 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)                 113   9e-26
SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)                 113   9e-26
SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.9  
SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)                       30   1.9  
SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)                    29   3.3  
SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)                       29   4.4  
SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)                      29   4.4  
SB_3201| Best HMM Match : C2 (HMM E-Value=0.0019)                      29   4.4  
SB_52111| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.8  
SB_18905| Best HMM Match : Nop (HMM E-Value=0)                         28   7.7  

>SB_26182| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 949

 Score =  113 bits (273), Expect = 9e-26
 Identities = 56/81 (69%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
 Frame = +1

Query: 274 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 453
           QLLF+S   +S  ISGVILFHET+YQKADDGTP V LL  +GIIPGIKVDKGVV L G++
Sbjct: 58  QLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTD 117

Query: 454 -DECTTQGLDDLAQRCAQYRR 513
             E TTQGLD L +RCAQY++
Sbjct: 118 AGETTTQGLDGLGERCAQYKK 138



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +2

Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTE 253
           TPEL+ ELK+IA+AIVA  KGILAADESTGTMGKRL +IGVENTE
Sbjct: 6   TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTE 50



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +3

Query: 507 QKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIV 644
           +KDGC FAKWRCVLKI   TPS  A++ENANVLARYASICQ   +V
Sbjct: 137 KKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASICQQNGLV 182


>SB_28080| Best HMM Match : Glycolytic (HMM E-Value=0)
          Length = 304

 Score =  113 bits (273), Expect = 9e-26
 Identities = 56/81 (69%), Positives = 65/81 (80%), Gaps = 1/81 (1%)
 Frame = +1

Query: 274 QLLFSSDAVLSENISGVILFHETLYQKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSE 453
           QLLF+S   +S  ISGVILFHET+YQKADDGTP V LL  +GIIPGIKVDKGVV L G++
Sbjct: 58  QLLFTSGKEMSNAISGVILFHETVYQKADDGTPFVRLLRDQGIIPGIKVDKGVVVLAGTD 117

Query: 454 -DECTTQGLDDLAQRCAQYRR 513
             E TTQGLD L +RCAQY++
Sbjct: 118 AGETTTQGLDGLGERCAQYKK 138



 Score = 76.6 bits (180), Expect = 2e-14
 Identities = 37/45 (82%), Positives = 41/45 (91%)
 Frame = +2

Query: 119 TPELQEELKKIAQAIVAPAKGILAADESTGTMGKRLQDIGVENTE 253
           TPEL+ ELK+IA+AIVA  KGILAADESTGTMGKRL +IGVENTE
Sbjct: 6   TPELKAELKRIAEAIVADGKGILAADESTGTMGKRLANIGVENTE 50



 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 33/46 (71%), Positives = 37/46 (80%)
 Frame = +3

Query: 507 QKDGCHFAKWRCVLKIGRNTPSYQAIQENANVLARYASICQSQRIV 644
           +KDGC FAKWRCVLKI   TPS  A++ENANVLARYASICQ   +V
Sbjct: 137 KKDGCDFAKWRCVLKITDYTPSELAMKENANVLARYASICQQNGLV 182


>SB_28495| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6753

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/65 (27%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +1

Query: 4    CQPSITCVVADPKSASLSCCN*YKNKKITNNVHLLSIPNS*AAGGAQEDR--SSNCSSRK 177
            CQ   TC      + + +C   Y  +  TNNV+  + P+    GG  +D   S +C+   
Sbjct: 3885 CQNGGTCASPSSSNYTCTCAPGYTGENCTNNVNECNDPDLCKNGGVCKDSFGSYSCNCSS 3944

Query: 178  GYPGR 192
             Y G+
Sbjct: 3945 AYSGK 3949


>SB_59586| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 349

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 313 ISGVILFHETLYQKADDGTPLVSLLEKK 396
           +SG ++ +E L+Q  DD TPLV +L ++
Sbjct: 103 LSGSVVSNEWLHQLMDDSTPLVQILAER 130


>SB_56305| Best HMM Match : zf-C4 (HMM E-Value=0)
          Length = 553

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/39 (35%), Positives = 25/39 (64%)
 Frame = +1

Query: 538 VAC*RLAATPPRTKLSRKTPMFSPATPPSVRANASWPIV 654
           ++C  + +TP +++ S + P+ SP TPPS  A +  P+V
Sbjct: 157 MSCDSMPSTP-KSEASPQAPIKSPETPPSFSAASPRPVV 194


>SB_58036| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 6074

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -1

Query: 503  WAQRWARSSRPWVVHSSSDPNSGTTPLSTLMPGMMPFFSSR 381
            WAQ ++ SS PW   S +   SGT   S+L   ++  +S +
Sbjct: 5909 WAQNYSSSSSPWAPSSPASVRSGTYS-SSLATDILDTYSQK 5948


>SB_50697| Best HMM Match : C2 (HMM E-Value=0.59)
          Length = 437

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 499 AQYRRTAATSPS-GVAC*RLAATPPRTKLSRKTPMFSPATPPSVRAN 636
           A++  T+ TSPS  V C     T    + +RKTP FS  T P +  N
Sbjct: 2   AKFELTSVTSPSVEVECGGAVVTSDVIRDTRKTPNFSKPTLPRMILN 48


>SB_44005| Best HMM Match : CUE (HMM E-Value=0.38)
          Length = 761

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 19/64 (29%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
 Frame = +1

Query: 349 QKADDGTPLVSLLEKKGIIPGIKVDKGVVPLFGSEDECTTQGLDDLAQRCAQYR-RTAAT 525
           +K DD    +S  E   ++P  K         G+   CT +G+D L Q   +   R +  
Sbjct: 202 KKFDDNIIDLSFTEDLDVLPKTKSKGSYCSCEGNNTRCTNEGIDRLEQSPNKCEARYSDI 261

Query: 526 SPSG 537
           SPSG
Sbjct: 262 SPSG 265


>SB_3201| Best HMM Match : C2 (HMM E-Value=0.0019)
          Length = 278

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 499 AQYRRTAATSPS-GVAC*RLAATPPRTKLSRKTPMFSPATPPSVRAN 636
           A++  T+ TSPS  V C     T    + +RKTP FS  T P +  N
Sbjct: 150 AKFELTSVTSPSVEVECGGAVVTSDVIRDTRKTPNFSKPTLPRMILN 196


>SB_52111| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 224

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +1

Query: 583 SRKTPMFSPATPPSVRANASWP 648
           SR+ P   PATPP V+ N S P
Sbjct: 186 SRRPPYEQPATPPDVKPNISDP 207


>SB_18905| Best HMM Match : Nop (HMM E-Value=0)
          Length = 194

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 22/49 (44%), Positives = 29/49 (59%), Gaps = 6/49 (12%)
 Frame = +2

Query: 104 YFQYPTPELQEELKKIAQAIVAPAKGILAA-----DEST-GTMGKRLQD 232
           YF      + ++++K A  IVA AK  LAA      EST GT+GKRLQ+
Sbjct: 111 YFSPIVQNMPQDMRKKAARIVA-AKCTLAARVDSFHESTEGTIGKRLQE 158


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,088,749
Number of Sequences: 59808
Number of extensions: 543790
Number of successful extensions: 1513
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1330
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1503
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1681430875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)