Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0345
         (618 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyc...    29   0.54 
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    28   0.94 
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    27   1.6  
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos...    27   2.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   6.6  
SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal prote...    25   8.8  
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    25   8.8  
SPAC977.11 |||conserved fungal protein|Schizosaccharomyces pombe...    25   8.8  
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c...    25   8.8  

>SPAC26A3.02 |myh1|myh|adenine DNA glycosylase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 29.1 bits (62), Expect = 0.54
 Identities = 13/54 (24%), Positives = 28/54 (51%)
 Frame = +3

Query: 36  EDMEVDLWELFLRKHLKSMEWHVRLGRTQVQTARYLMNIWLPCPHTIRRCYEVE 197
           ED  ++ WE  +++  + +   + L +T+V+T +     W+    T++ C E E
Sbjct: 48  EDSPLEDWEQPVQRLYEVLVSEIMLQQTRVETVKRYYTKWMETLPTLKSCAEAE 101


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 28.3 bits (60), Expect = 0.94
 Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 4/50 (8%)
 Frame = -1

Query: 147  SSSNAPFAPASVPVARA----IPCSSNVFSKIAPTNQLPCPRPYISSSTV 10
            SSS AP AP  VP   +    IP  S      AP+   P P+P +++  V
Sbjct: 1055 SSSGAPSAPPPVPAPSSEIPSIPAPSGAPPVPAPSGIPPVPKPSVAAPPV 1104


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 17/41 (41%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
 Frame = -1

Query: 141 SNAPFAPASVPVARAIPCSSNVFSK-IAPTNQLPCPRPYIS 22
           ++A F P+S+P + +I  SSN F K  AP N+ P   P+I+
Sbjct: 236 ADAAFKPSSLP-STSISASSNAFYKPAAPDNERPLD-PHIT 274


>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 731

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 15/45 (33%), Positives = 20/45 (44%)
 Frame = -1

Query: 147 SSSNAPFAPASVPVARAIPCSSNVFSKIAPTNQLPCPRPYISSST 13
           SS N PF+P  +   RA P  +   S    TN    P   I++ T
Sbjct: 676 SSQNLPFSPMKISPIRASPVKTIPSSPSPTTNIFSAPLNNITNCT 720


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 6.6
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +3

Query: 234 NEHLPSTHEDKAPPTTRHMRFSFLLQAKYERISG 335
           N +  S H D+    +R  R S ++ A ++R+SG
Sbjct: 126 NGYARSMHNDRKVRASRSRRISGMILAHFKRLSG 159


>SPBPB8B6.06c ||SPAPB8B6.06c, SPAPB8B6.06c|conserved fungal
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 461 KHNKQFYLSILRCFCYLRKLISTWIT*RLVTGVHGQQQY-RS*AGDSFI 318
           KHN  F L+I   FC      S+W+  ++ TG+     + R   G SF+
Sbjct: 61  KHNATFLLAITTGFCGSLTTFSSWML-QMFTGMANLDPFERRGRGYSFL 108


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +3

Query: 33  DEDMEVDLWELFLRKHLKSMEWH 101
           D    VDLW LF +  +K++ W+
Sbjct: 17  DHPFGVDLWHLFEQLSIKTIGWN 39


>SPAC977.11 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 311

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = -2

Query: 461 KHNKQFYLSILRCFCYLRKLISTWIT*RLVTGVHGQQQY-RS*AGDSFI 318
           KHN  F L+I   FC      S+W+  ++ TG+     + R   G SF+
Sbjct: 61  KHNATFLLAITTGFCGSLTTFSSWML-QMFTGMANLDPFERRGRGYSFL 108


>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 596

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +3

Query: 228 SENEHLPSTHEDKAPPT 278
           S NEH PS H +  PP+
Sbjct: 412 SPNEHSPSNHPEDFPPS 428


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,787,151
Number of Sequences: 5004
Number of extensions: 59878
Number of successful extensions: 185
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 185
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)