Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0345
(618 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.43
SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.7
SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28) 29 4.0
SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05) 28 5.3
SB_35115| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 28 5.3
SB_25559| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06) 28 7.0
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 28 7.0
SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.0
SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.2
>SB_44329| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 423
Score = 31.9 bits (69), Expect = 0.43
Identities = 22/57 (38%), Positives = 33/57 (57%), Gaps = 4/57 (7%)
Frame = -3
Query: 382 RGWSLASMDNSNTAAKPEILSYFA*RRNENL---MCRVVGGALSSCV-EGRCSFSLK 224
+G+S A++D TA+ P +LS +A R +NL +C + GG +CV E SLK
Sbjct: 265 KGFSAAAIDFI-TASVPMVLSSYASIRQDNLDKLLCHIQGGVWQACVCEAVVILSLK 320
>SB_56198| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 176
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = -1
Query: 450 TVLPFDFTVFLLPPETDQHVDYLEVGHWRPWTTAIPQLSRRFFHTSLEEGM 298
+VLP VFLL + V +L +W T +P L+ LE G+
Sbjct: 70 SVLPVPMAVFLLQTQLQTRVGFLIALNWASTETRLPWLTSDATRVILERGL 120
>SB_2499| Best HMM Match : Sugar_tr (HMM E-Value=1e-28)
Length = 456
Score = 28.7 bits (61), Expect = 4.0
Identities = 26/88 (29%), Positives = 44/88 (50%), Gaps = 8/88 (9%)
Frame = +3
Query: 111 GRTQVQTARYLMN--IWLPCPHTIRRCYEVERAYPFKQFI-----FSENEHLP-STHEDK 266
G + V +ARYL+ I +P P +R +VE ++ K+FI F++ ++ S E K
Sbjct: 275 GGSTVLSARYLVRSAIRIPLPEGLRSVSDVEMSHTDKRFIILFAFFADTQNQRFSLKEFK 334
Query: 267 APPTTRHMRFSFLLQAKYERISGLAAVL 350
P R S L +++ SG+ A +
Sbjct: 335 NPSLLRPFLISMSLHF-FQQFSGINAFM 361
>SB_35943| Best HMM Match : MFS_1 (HMM E-Value=1.5e-05)
Length = 514
Score = 28.3 bits (60), Expect = 5.3
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = -2
Query: 191 FITTTY-GMGAWEPYVHQVTRRLHLRPSQS 105
F T+ Y G+GA PY+ ++LHL P+Q+
Sbjct: 53 FYTSFYTGIGALYPYLPMYFKQLHLSPNQT 82
>SB_35115| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 196
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 198 RAYPFKQFIFSENEHLPSTHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQ 377
R P ++F E L S ED+ PP T + R A+ ++++ + L+ + AS +
Sbjct: 46 RESPDRRFQVVREEALRSAEEDRPPPRTAYSREVEAESAECQQVTAPQSKLIQELLASQK 105
Query: 378 PLS 386
L+
Sbjct: 106 VLT 108
>SB_25559| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 354
Score = 27.9 bits (59), Expect = 7.0
Identities = 10/31 (32%), Positives = 16/31 (51%)
Frame = -2
Query: 227 KNKLFERIGTFYFITTTYGMGAWEPYVHQVT 135
++K + G F +I TY + W YV + T
Sbjct: 79 RDKWYSTFGVFNYIWNTYSIKLWTKYVDETT 109
>SB_52753| Best HMM Match : zf-CCHC (HMM E-Value=7.6e-06)
Length = 357
Score = 27.9 bits (59), Expect = 7.0
Identities = 17/63 (26%), Positives = 31/63 (49%)
Frame = +3
Query: 198 RAYPFKQFIFSENEHLPSTHEDKAPPTTRHMRFSFLLQAKYERISGLAAVLLLSMDASDQ 377
R P ++F E L S ED+ PP T + R A+ ++++ + L+ + AS +
Sbjct: 207 RESPDRRFQAVREEALRSAEEDRPPPRTAYSREVEAESAECQQVTAPQSKLIQELLASQK 266
Query: 378 PLS 386
L+
Sbjct: 267 VLT 269
>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
Length = 2059
Score = 27.9 bits (59), Expect = 7.0
Identities = 14/51 (27%), Positives = 23/51 (45%)
Frame = +3
Query: 63 LFLRKHLKSMEWHVRLGRTQVQTARYLMNIWLPCPHTIRRCYEVERAYPFK 215
+ ++K L++ + T + A Y M W PC IR+C + P K
Sbjct: 465 IMMQKELENKLFLALAVFTNLANANYAMCKWCPCEDAIRQCLKGLDLLPVK 515
>SB_4672| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 619
Score = 27.9 bits (59), Expect = 7.0
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -2
Query: 464 HKHNKQFYLSILRCFCYLRKLIS 396
HKH K F +S L+CF R L S
Sbjct: 254 HKHRKHFCMSCLQCFSSERVLTS 276
>SB_53822| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 258
Score = 27.5 bits (58), Expect = 9.2
Identities = 17/43 (39%), Positives = 22/43 (51%), Gaps = 3/43 (6%)
Frame = +3
Query: 231 ENEHLPSTHE---DKAPPTTRHMRFSFLLQAKYERISGLAAVL 350
E+ H+P HE D PPT +H+ FL +YER L L
Sbjct: 38 ESFHIPFDHEEVKDLIPPTAKHV---FLSINRYERKKNLPLAL 77
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,969,496
Number of Sequences: 59808
Number of extensions: 457018
Number of successful extensions: 1066
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 906
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1065
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1524174750
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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