Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0345
         (618 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g48940.1 68418.m06054 leucine-rich repeat transmembrane prote...    27   7.5  
At3g58830.1 68416.m06557 haloacid dehalogenase (HAD) superfamily...    27   10.0 
At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein...    27   10.0 

>At5g48940.1 68418.m06054 leucine-rich repeat transmembrane protein
           kinase, putative 
          Length = 1135

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/26 (46%), Positives = 17/26 (65%)
 Frame = -1

Query: 81  NVFSKIAPTNQLPCPRPYISSSTVDN 4
           +VFS   P++  PC  PYI+ S+ DN
Sbjct: 56  SVFSGWNPSDSDPCQWPYITCSSSDN 81


>At3g58830.1 68416.m06557 haloacid dehalogenase (HAD) superfamily
           protein contains TIGRfam TIGR01668: HAD superfamily
           (subfamily IIIA) phosphatase, TIGR01668 and TIGR01662:
           hydrolase, HAD-superfamily, subfamily IIIA
          Length = 343

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 17/53 (32%), Positives = 23/53 (43%)
 Frame = +3

Query: 36  EDMEVDLWELFLRKHLKSMEWHVRLGRTQVQTARYLMNIWLPCPHTIRRCYEV 194
           +D+    WE+  RK  K     V   +    TA Y + IW P   +I RC  V
Sbjct: 158 KDLRYIDWEVLKRKGFKG----VVFDKDNTLTAPYSLAIWPPLRPSIERCKAV 206


>At2g33410.1 68415.m04095 heterogeneous nuclear ribonucleoprotein,
           putative / hnRNP, putative 
          Length = 404

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 186 NNDVWYGGMGAICSSSNAPFAPASVPVA 103
           +N V YGG G   + + AP+   SVP A
Sbjct: 254 SNGVGYGGFGGYGNPAGAPYGNPSVPGA 281


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,526,547
Number of Sequences: 28952
Number of extensions: 313433
Number of successful extensions: 763
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 727
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1246162608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)