Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0343
         (665 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF592538-1|ABQ95984.1|  582|Tribolium castaneum beta-N-acetylglu...    26   0.32 
AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembran...    23   3.0  
AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembran...    23   3.0  
AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochr...    22   5.2  
X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.       21   6.9  

>EF592538-1|ABQ95984.1|  582|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG3 protein.
          Length = 582

 Score = 25.8 bits (54), Expect = 0.32
 Identities = 14/46 (30%), Positives = 20/46 (43%)
 Frame = -1

Query: 569 LYVTSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPSCLLQYQWVR 432
           L++T   S   ++  V  +   G  G  + Y P     LLQY  VR
Sbjct: 252 LHLTDAVSFPIVLPKVQELARFGAYGPDMIYTPQDIRDLLQYSLVR 297


>AF442747-1|AAL40947.1|  669|Tribolium castaneum ABC transmembrane
           transporter protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -1

Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
           SG     LSF+   L  P  ++    TSG  S   +  +  + E  + G  +    HQPS
Sbjct: 221 SGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPS 280


>AF422804-1|AAL56571.1|  669|Tribolium castaneum ABC transmembrane
           transporter white protein.
          Length = 669

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 3/60 (5%)
 Frame = -1

Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
           SG     LSF+   L  P  ++    TSG  S   +  +  + E  + G  +    HQPS
Sbjct: 221 SGGEKKRLSFAAEVLTNPKLMFCDEPTSGLDSFMALTVMQVLKEMAMTGKTVICTIHQPS 280


>AF265299-1|AAG17642.1|   63|Tribolium castaneum putative cytochrome
           P450 monooxigenase protein.
          Length = 63

 Score = 21.8 bits (44), Expect = 5.2
 Identities = 9/29 (31%), Positives = 15/29 (51%)
 Frame = +1

Query: 490 DPHTPASKIDPTVTMMQVEEKPDVTYSDV 576
           +P       +  V +   E+KP V+YSD+
Sbjct: 15  NPEAQEKAYEEQVALFGKEKKPIVSYSDL 43


>X91618-1|CAA62821.1|  524|Tribolium castaneum hunchback protein.
          Length = 524

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 9/21 (42%), Positives = 10/21 (47%)
 Frame = -2

Query: 493 DLVFITIHTNPHAFFNISGCD 431
           D V  TIH   H F N   C+
Sbjct: 482 DAVLYTIHMGYHGFHNPFTCN 502


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,551
Number of Sequences: 336
Number of extensions: 3205
Number of successful extensions: 9
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)