Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0343
(665 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC16C6.07c |rpt1||19S proteasome regulatory subunit Rpt1|Schiz... 99 3e-22
SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit Rpt6|S... 51 2e-07
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 47 2e-06
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 47 2e-06
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 44 2e-05
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 44 3e-05
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 37 0.003
SPBC56F2.07c |||AAA family ATPase, unknown biological role|Schiz... 35 0.012
SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase Mde10|S... 33 0.037
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9... 29 0.80
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 27 1.8
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 26 5.6
SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyce... 25 9.8
SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po... 25 9.8
SPBC1604.04 |||thiamine pyrophosphate transporter|Schizosaccharo... 25 9.8
>SPBC16C6.07c |rpt1||19S proteasome regulatory subunit
Rpt1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 438
Score = 99 bits (238), Expect = 3e-22
Identities = 48/75 (64%), Positives = 57/75 (76%), Gaps = 2/75 (2%)
Frame = +2
Query: 296 KQTLQNEQPLQVARCTKIINADSNDPK--YIINVKQFAKFVVDLQDSVAPTDIEEGMRVG 469
+Q + EQPLQVARCTKII + + K Y+IN+KQ AKFVV L + V+PTDIEEGMRVG
Sbjct: 86 RQRMSEEQPLQVARCTKIIENEQSAEKNAYVINLKQIAKFVVSLGERVSPTDIEEGMRVG 145
Query: 470 VDRNKYQIHIPLPRK 514
DRNKY I +PLP K
Sbjct: 146 CDRNKYAIQLPLPPK 160
Score = 81.8 bits (193), Expect = 8e-17
Identities = 37/41 (90%), Positives = 39/41 (95%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
KIDP+VTMMQVEEKPDVTY DVGGCKEQIE+LREVVE PLL
Sbjct: 160 KIDPSVTMMQVEEKPDVTYGDVGGCKEQIERLREVVELPLL 200
Score = 58.0 bits (134), Expect = 1e-09
Identities = 25/47 (53%), Positives = 33/47 (70%)
Frame = +3
Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260
LDEGDI LLKSY G Y + + ++E + V+KR+N+ GIKESD G
Sbjct: 27 LDEGDIELLKSYATGPYARELAAIKEDTEAVLKRINDTVGIKESDTG 73
>SPBC23G7.12c |rpt6|let1|19S proteasome regulatory subunit
Rpt6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 403
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/41 (48%), Positives = 33/41 (80%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
+K+DP V++M VE+ PD TY VGG ++QI++++EV+E P+
Sbjct: 125 NKVDPLVSLMMVEKIPDSTYEMVGGLEKQIKEIKEVIELPV 165
Score = 30.3 bits (65), Expect = 0.26
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
K ++ V K+VVD+ + +I+ +RV + + YQ+ LP K
Sbjct: 80 KVLVKVHPEGKYVVDISPDIDIKEIKPNIRVALRNDSYQLIKILPNK 126
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/41 (46%), Positives = 31/41 (75%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLLLG 639
D +++M++ +E+PDV+Y+DVGG Q +++RE VE PL G
Sbjct: 117 DSSISMLRPDERPDVSYADVGGLDVQKQEVREAVELPLTQG 157
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 47.2 bits (107), Expect = 2e-06
Identities = 19/40 (47%), Positives = 29/40 (72%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
++DP V M +E+ D++++ VGG EQI +LREV+E PL
Sbjct: 113 EVDPLVYNMSIEDPGDISFAGVGGLNEQIRELREVIELPL 152
Score = 27.1 bits (57), Expect = 2.4
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
++I+ ++VV +++V + + +G+RV +D I LPR+
Sbjct: 67 RFIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPRE 113
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 44.0 bits (99), Expect = 2e-05
Identities = 15/38 (39%), Positives = 29/38 (76%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
DP + +M++++ P +Y+D+GG + QI++++E VE PL
Sbjct: 174 DPMINVMKLDKAPTESYADIGGLESQIQEIKEAVELPL 211
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 43.6 bits (98), Expect = 3e-05
Identities = 19/41 (46%), Positives = 27/41 (65%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
S+ D V M+V+EKP YSD+GG +QIE+L E + P+
Sbjct: 165 SEYDSRVKAMEVDEKPTERYSDIGGLSKQIEELFEAIVLPM 205
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 36.7 bits (81), Expect = 0.003
Identities = 13/25 (52%), Positives = 20/25 (80%)
Frame = +1
Query: 556 DVTYSDVGGCKEQIEKLREVVETPL 630
+V Y D+GGC+ Q+ ++RE+VE PL
Sbjct: 220 EVGYDDIGGCRRQMAQIRELVELPL 244
Score = 33.5 bits (73), Expect = 0.028
Identities = 14/39 (35%), Positives = 24/39 (61%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
+P+ V E P+V + D+GG +E +LRE V+ P++
Sbjct: 480 NPSALRETVVEVPNVRWEDIGGLEEVKRELRETVQMPVM 518
>SPBC56F2.07c |||AAA family ATPase, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 34.7 bits (76), Expect = 0.012
Identities = 16/31 (51%), Positives = 22/31 (70%)
Frame = +1
Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPLLLG 639
E P+V +SD+GG +E +KL+E VE PL G
Sbjct: 541 ESPNVHWSDIGGQEEVKQKLKESVEWPLTHG 571
Score = 30.7 bits (66), Expect = 0.20
Identities = 11/23 (47%), Positives = 18/23 (78%)
Frame = +1
Query: 559 VTYSDVGGCKEQIEKLREVVETP 627
VT+S +GG + QI ++R++VE P
Sbjct: 276 VTFSSIGGLQAQIAQIRDIVELP 298
>SPAC17A5.04c |mde10|mug139|spore wall assembly peptidase
Mde10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 512
Score = 33.1 bits (72), Expect = 0.037
Identities = 22/68 (32%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
Frame = -1
Query: 656 QLHEFPPSNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMV-TVGSIFEAGVCGSGIY 480
+L+ PSNS + +L FS CS+ SL S +C+ + S+ G CG+GI
Sbjct: 265 ELYIMNPSNS-YTYANLRFSDCSILQLHSLVEKKYVSLSCLSKPSEKSVLRLGTCGNGIV 323
Query: 479 YDPHQPSC 456
D + C
Sbjct: 324 EDGEECDC 331
>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
Srb9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1223
Score = 28.7 bits (61), Expect = 0.80
Identities = 18/56 (32%), Positives = 27/56 (48%)
Frame = -1
Query: 638 PSNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEAGVCGSGIYYDP 471
P N V +S +I PTS Y+ S +S+ ++ SIF+ G G Y+ P
Sbjct: 487 PYNVEVDIPEISLNISDSKIPTSAYMPSYYSAVIFPSSISSIFQKYNYG-GKYWCP 541
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.5 bits (58), Expect = 1.8
Identities = 16/54 (29%), Positives = 27/54 (50%)
Frame = -1
Query: 662 DTQLHEFPPSNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEAG 501
D + + FP ++ ST+ LSF+ L P T++ TS + T+ S + G
Sbjct: 114 DIRYNGFPEPSNTDSTSILSFNTIRLIPSTNVINTSHYKGFNRYPTISSTVKVG 167
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 25.8 bits (54), Expect = 5.6
Identities = 16/49 (32%), Positives = 23/49 (46%)
Frame = -1
Query: 665 LDTQLHEFPPSNSGVSTTSLSFSICSLHPPTSLYVTSGFSSTCIMVTVG 519
L T L+ S+ +ST+S + S H PT TS S+T + G
Sbjct: 790 LATSLYLSSSSSRTISTSSTNEYNTSFHAPTVSSTTSSSSTTSLAANKG 838
>SPAPB15E9.01c ||SPAPB18E9.06c|sequence orphan|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 635 SNSGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 540
+ SG+ T+S S + S PTS + +SGF++T
Sbjct: 627 TTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 659
Score = 25.0 bits (52), Expect = 9.8
Identities = 13/33 (39%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 635 SNSGVSTTSLSFSIC-SLHPPTSLYVTSGFSST 540
+ SG+ T+S S + S PTS + +SGF++T
Sbjct: 689 TTSGLPTSSASTPLSNSTVAPTSTFTSSGFNTT 721
>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1057
Score = 25.0 bits (52), Expect = 9.8
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = -1
Query: 566 YVTSGFSSTCIMVTVGSIFEAGVCGSGIYYD 474
Y+TS + TC++V+ S F VC I+Y+
Sbjct: 604 YLTSQKNITCLIVSHDSSFLDHVCTDIIHYE 634
>SPBC1604.04 |||thiamine pyrophosphate
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 314
Score = 25.0 bits (52), Expect = 9.8
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 248 LFDACQFINPLHYCLNSFFYFLNDFCVLSLAV*LQKRNI 132
L+ +C F + Y LNS FY L + + ++ + + ++ +
Sbjct: 265 LWLSCHFYYSIIYLLNSMFYLLTFYSLRAITMLIYEQTL 303
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,016
Number of Sequences: 5004
Number of extensions: 50103
Number of successful extensions: 170
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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