Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0343
         (665 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_6286| Best HMM Match : No HMM Matches (HMM E-Value=.)              105   2e-23
SB_9909| Best HMM Match : AAA (HMM E-Value=0)                          87   9e-18
SB_6665| Best HMM Match : No HMM Matches (HMM E-Value=.)               55   5e-08
SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)               49   4e-06
SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)                48   5e-06
SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)              46   3e-05
SB_33442| Best HMM Match : AAA (HMM E-Value=0)                         43   3e-04
SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)               35   0.068
SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.5  
SB_28977| Best HMM Match : AAA (HMM E-Value=0)                         30   1.9  
SB_45627| Best HMM Match : AAA (HMM E-Value=0)                         29   2.6  
SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   2.6  
SB_24728| Best HMM Match : Oxidored_q4 (HMM E-Value=8.5)               29   3.4  
SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)                     29   4.5  
SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.5  
SB_52592| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.9  
SB_11841| Best HMM Match : Ras (HMM E-Value=0)                         28   7.9  
SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035)                   28   7.9  

>SB_6286| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 102

 Score =  105 bits (253), Expect = 2e-23
 Identities = 51/57 (89%), Positives = 51/57 (89%)
 Frame = +2

Query: 296 KQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRV 466
           KQTL  EQPLQVARCTKIINADS D KYIINVKQFAKFVVDL D VAPTDIEEGMRV
Sbjct: 45  KQTLHGEQPLQVARCTKIINADSEDAKYIINVKQFAKFVVDLGDQVAPTDIEEGMRV 101


>SB_9909| Best HMM Match : AAA (HMM E-Value=0)
          Length = 400

 Score = 87.4 bits (207), Expect = 9e-18
 Identities = 41/47 (87%), Positives = 43/47 (91%), Gaps = 1/47 (2%)
 Frame = +1

Query: 496 HTPAS-KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
           H P   KIDPTVTMMQVEEKPDVTYSD+GGCKEQI+KLREVVETPLL
Sbjct: 59  HIPLPPKIDPTVTMMQVEEKPDVTYSDIGGCKEQIDKLREVVETPLL 105



 Score = 34.3 bits (75), Expect = 0.090
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +2

Query: 470 VDRNKYQIHIPLPRK 514
           VDRNKYQIHIPLP K
Sbjct: 51  VDRNKYQIHIPLPPK 65


>SB_6665| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 91

 Score = 55.2 bits (127), Expect = 5e-08
 Identities = 26/28 (92%), Positives = 26/28 (92%)
 Frame = +2

Query: 383 INVKQFAKFVVDLQDSVAPTDIEEGMRV 466
           INVKQFAKFVVDL D VAPTDIEEGMRV
Sbjct: 63  INVKQFAKFVVDLGDQVAPTDIEEGMRV 90


>SB_3919| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 442

 Score = 48.8 bits (111), Expect = 4e-06
 Identities = 19/41 (46%), Positives = 32/41 (78%)
 Frame = +1

Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
           +++DP V++M VE+ PD TY  VGG  +QI++++EV+E P+
Sbjct: 157 AEVDPLVSLMMVEKVPDSTYEMVGGLDKQIKEIKEVIELPV 197


>SB_35973| Best HMM Match : zf-CCHC (HMM E-Value=0.0026)
          Length = 779

 Score = 48.4 bits (110), Expect = 5e-06
 Identities = 21/40 (52%), Positives = 29/40 (72%)
 Frame = +1

Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
           ++DP V  M  E+  +++YSDVGG  EQI +LREV+E PL
Sbjct: 116 EVDPLVYNMSHEDPGNISYSDVGGLSEQIRELREVIELPL 155


>SB_33584| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 455

 Score = 46.0 bits (104), Expect = 3e-05
 Identities = 18/38 (47%), Positives = 29/38 (76%)
 Frame = +1

Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
           DP VT+M++E+ P  +Y+D+GG   QI++++E VE PL
Sbjct: 363 DPMVTVMKLEKAPQESYADIGGLDTQIQEIKESVELPL 400


>SB_33442| Best HMM Match : AAA (HMM E-Value=0)
          Length = 369

 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 17/38 (44%), Positives = 28/38 (73%)
 Frame = +1

Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
           D ++ M+  EEKP+V+Y+++GG   Q +++RE VE PL
Sbjct: 147 DSSIAMLTNEEKPNVSYAEIGGMDIQKQEIREAVELPL 184


>SB_5903| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 346

 Score = 34.7 bits (76), Expect = 0.068
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKL 606
           ++ D  V  M+V+E+P   YSD+GG  +QI+++
Sbjct: 134 AEYDSRVKAMEVDERPTEQYSDIGGLDQQIQEM 166


>SB_48268| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4527

 Score = 30.3 bits (65), Expect = 1.5
 Identities = 17/50 (34%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
 Frame = -1

Query: 662  DTQLHEFPPSNSGVSTTSLS--FSICSLHPPTSLYVTSGFSSTCIMVTVG 519
            DT++HE   S S + +  +   F   +L  P+SL +TSG +   I+V  G
Sbjct: 2311 DTEIHETNLSASSIPSEKVKSLFMSSTLDTPSSLSITSGSTENSILVDQG 2360


>SB_28977| Best HMM Match : AAA (HMM E-Value=0)
          Length = 442

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 13/30 (43%), Positives = 19/30 (63%)
 Frame = +1

Query: 541 VEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
           V EKP+V +SD+ G +   E L+E V  P+
Sbjct: 88  VMEKPNVKWSDIAGLESAKEALKEAVILPI 117


>SB_45627| Best HMM Match : AAA (HMM E-Value=0)
          Length = 628

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 10/32 (31%), Positives = 20/32 (62%)
 Frame = +1

Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLRE 612
           +P     + E   +V Y D+GGC++Q+ +++E
Sbjct: 141 EPVKREEEEESLNEVGYDDIGGCRKQLAQIKE 172



 Score = 29.1 bits (62), Expect = 3.4
 Identities = 12/38 (31%), Positives = 24/38 (63%)
 Frame = +1

Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
           +P+     V E P+V++ D+GG +    +L+E+V+ P+
Sbjct: 293 NPSALRETVVEVPNVSWDDIGGLEGVKRELQELVQYPV 330


>SB_14682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 802

 Score = 29.5 bits (63), Expect = 2.6
 Identities = 15/28 (53%), Positives = 18/28 (64%)
 Frame = +1

Query: 547 EKPDVTYSDVGGCKEQIEKLREVVETPL 630
           E P V +SDVGG +    KL+E VE PL
Sbjct: 530 EVPKVHWSDVGGNEMIKRKLKEAVEWPL 557


>SB_24728| Best HMM Match : Oxidored_q4 (HMM E-Value=8.5)
          Length = 121

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 13/35 (37%), Positives = 17/35 (48%)
 Frame = -3

Query: 558 IRFLLDLHHGDRWIYFRGRGMWIWYLLRSTPTLMP 454
           +  LL L     W +  GRG W  +L   T TL+P
Sbjct: 52  VTLLLSLEGAAEWSHKWGRGWWFKFLFIRTRTLVP 86


>SB_34605| Best HMM Match : APG6 (HMM E-Value=0.94)
          Length = 1047

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/48 (29%), Positives = 25/48 (52%)
 Frame = -1

Query: 614 TSLSFSICSLHPPTSLYVTSGFSSTCIMVTVGSIFEAGVCGSGIYYDP 471
           +S+ FS+ SLH PT     +    T  +VT   + +  + G+ + +DP
Sbjct: 257 SSVFFSVGSLHAPTYCTAVAPTGRTLCLVTRIMVVQLRIDGAKLIFDP 304


>SB_40956| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1086

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +1

Query: 553 PDVTYSDVGGCKEQIEKLREVVETPLL 633
           PD+++ DVGG     E++ + ++ PLL
Sbjct: 807 PDISWKDVGGLDSVKEEILDTIQLPLL 833


>SB_23558| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 746

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = -3

Query: 375 FGSFESALMIFVHRATCSGCSFCSVCLSAARSHKAGGANP 256
           + SFES+ ++    +TC   S C    S  R+ K  G NP
Sbjct: 555 YKSFESSALVPSRPSTCGLDSPCQTDTSICRNGKCSGGNP 594


>SB_52592| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 194

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 18/67 (26%), Positives = 29/67 (43%), Gaps = 4/67 (5%)
 Frame = -3

Query: 504 RGMWIWYLLRSTPTLMPSSISVGATESCKS----TTNFANCFTLIMYFGSFESALMIFVH 337
           R M I  L  S    M   +  G+ E C      T ++  C  L+M+ GS+E  + + +H
Sbjct: 34  RCMRIVRLTGSYERCMRLVMHTGSYERCMRLVMLTGSYERCMRLVMHTGSYERCMRLVMH 93

Query: 336 RATCSGC 316
             +   C
Sbjct: 94  TGSYERC 100


>SB_33374| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 13/24 (54%), Positives = 16/24 (66%)
 Frame = +2

Query: 356  ADSNDPKYIINVKQFAKFVVDLQD 427
            ADS+DP Y   V+ FAK +VD  D
Sbjct: 2311 ADSSDPTYWPRVQSFAKNIVDYFD 2334


>SB_11841| Best HMM Match : Ras (HMM E-Value=0)
          Length = 523

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/28 (32%), Positives = 20/28 (71%)
 Frame = +1

Query: 562 TYSDVGGCKEQIEKLREVVETPLLLGGN 645
           ++ D+   +EQI+++++  E P++L GN
Sbjct: 315 SFEDINQYREQIKRVKDAEEVPMVLVGN 342


>SB_16001| Best HMM Match : LRR_1 (HMM E-Value=0.035)
          Length = 277

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 425 DSVAPTDIEEGMRVGVDRNKYQIHIPLPRK*IQRS 529
           ++V   ++EEGM    + +  Q+H+PL R+  +R+
Sbjct: 115 EAVRKLELEEGMENSDEEDHRQLHVPLRRRKAKRT 149


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,470,859
Number of Sequences: 59808
Number of extensions: 381927
Number of successful extensions: 979
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 883
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 977
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1717720750
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)