Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0343
(665 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1... 120 1e-27
At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit, puta... 98 5e-21
At1g53790.1 68414.m06122 F-box family protein contains Pfam PF00... 54 9e-08
At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit, puta... 52 3e-07
At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a) 52 3e-07
At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3... 48 4e-06
At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2... 47 1e-05
At2g20140.1 68415.m02353 26S protease regulatory complex subunit... 47 1e-05
At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5... 42 4e-04
At1g09100.1 68414.m01016 26S protease regulatory subunit 6A, put... 42 4e-04
At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4... 41 6e-04
At1g45000.1 68414.m05158 26S proteasome regulatory complex subun... 41 6e-04
At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)... 36 0.024
At1g05910.1 68414.m00620 cell division cycle protein 48-related ... 35 0.042
At5g03340.1 68418.m00286 cell division cycle protein 48, putativ... 34 0.074
At3g53230.1 68416.m05865 cell division cycle protein 48, putativ... 34 0.074
At5g13580.1 68418.m01570 ABC transporter family protein 31 0.91
At2g19780.1 68415.m02311 leucine-rich repeat family protein / ex... 30 1.6
At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuol... 29 2.1
At3g55090.1 68416.m06118 ABC transporter family protein ATP-bind... 29 3.7
At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger) fa... 28 4.9
At2g39350.1 68415.m04830 ABC transporter family protein 28 4.9
At1g43000.1 68414.m04950 zinc-binding family protein similar to ... 28 4.9
At3g55130.1 68416.m06122 ABC transporter family protein breast c... 28 6.4
At3g55110.1 68416.m06120 ABC transporter family protein ATP-bind... 28 6.4
>At1g53750.1 68414.m06115 26S proteasome AAA-ATPase subunit (RPT1a)
similar to 26S proteasome ATPase subunit GI:1395190 from
[Spinacia oleracea]
Length = 426
Score = 120 bits (288), Expect = 1e-27
Identities = 56/73 (76%), Positives = 62/73 (84%)
Frame = +2
Query: 296 KQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVD 475
KQ +Q EQPLQVARCTKII+ ++ D KY+INVKQ AKFVV L D V+PTDIEEGMRVGVD
Sbjct: 77 KQMMQEEQPLQVARCTKIISPNTEDAKYVINVKQIAKFVVGLGDKVSPTDIEEGMRVGVD 136
Query: 476 RNKYQIHIPLPRK 514
RNKYQI IPLP K
Sbjct: 137 RNKYQIQIPLPPK 149
Score = 79.4 bits (187), Expect = 2e-15
Identities = 35/41 (85%), Positives = 39/41 (95%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
KIDP+VTMM VEEKPDVTY+DVGGCKEQIEK+REVVE P+L
Sbjct: 149 KIDPSVTMMTVEEKPDVTYNDVGGCKEQIEKMREVVELPML 189
Score = 60.5 bits (140), Expect = 1e-09
Identities = 28/47 (59%), Positives = 37/47 (78%)
Frame = +3
Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260
LDE DIALLK+YG G Y+ IK+VE+ I+ + K++N+L GIKESD G
Sbjct: 18 LDEDDIALLKTYGLGPYSAPIKKVEKEIKDLAKKINDLCGIKESDTG 64
>At1g53780.1 68414.m06120 26S proteasome AAA-ATPase subunit,
putative similar to 26S proteasome AAA-ATPase subunit
RPT1 SP:Q41365 from [Spinacia oleracea]
Length = 464
Score = 97.9 bits (233), Expect = 5e-21
Identities = 43/73 (58%), Positives = 56/73 (76%)
Frame = +2
Query: 296 KQTLQNEQPLQVARCTKIINADSNDPKYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVD 475
KQ +Q EQPL VA CT+II+ ++ D KY++++K+ K+VV L D +PTDIE GMRVGVD
Sbjct: 114 KQMMQEEQPLLVATCTQIISPNTEDAKYVVDIKKIGKYVVGLGDKASPTDIEAGMRVGVD 173
Query: 476 RNKYQIHIPLPRK 514
+ KYQI IPLP K
Sbjct: 174 QKKYQIQIPLPPK 186
Score = 78.6 bits (185), Expect = 3e-15
Identities = 34/41 (82%), Positives = 38/41 (92%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
KIDP+VTMM VEEKPD TYSD+GGCKEQIEK+REVVE P+L
Sbjct: 186 KIDPSVTMMTVEEKPDATYSDIGGCKEQIEKIREVVELPML 226
>At1g53790.1 68414.m06122 F-box family protein contains Pfam
PF00646: F-box domain; contains TIGRFAM TIGR01640 :
F-box protein interaction domain
Length = 444
Score = 54.0 bits (124), Expect = 9e-08
Identities = 25/47 (53%), Positives = 36/47 (76%)
Frame = +3
Query: 120 LDEGDIALLKSYGQGQYTKIIKEVEEGIQTVMKRVNELTGIKESDQG 260
LDE DIAL+K+YG Y+ IK+VE+ I+ + +++N+L GIKESD G
Sbjct: 10 LDEDDIALVKTYGLVPYSAPIKKVEKEIKELTEKINDLCGIKESDTG 56
>At5g20000.1 68418.m02380 26S proteasome AAA-ATPase subunit,
putative almost identical to 26S proteasome AAA-ATPase
subunit RPT6a GI:6652888 from [Arabidopsis thaliana];
almost identical to a member of conserved Sug1 CAD
family AtSUG1 GI:13537115 from [Arabidopsis thaliana]
Length = 419
Score = 52.0 bits (119), Expect = 3e-07
Identities = 20/41 (48%), Positives = 32/41 (78%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
SK+DP V +M+VE+ PD TY +GG +QI++++EV+E P+
Sbjct: 141 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPI 181
Score = 34.3 bits (75), Expect = 0.074
Identities = 15/47 (31%), Positives = 25/47 (53%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
K ++ V K+VVD+ S+ T + RV + + Y +H+ LP K
Sbjct: 96 KVLVKVHPEGKYVVDIDKSIDITKLTPSTRVALRNDSYVLHLVLPSK 142
>At5g19990.1 68418.m02379 26S proteasome AAA-ATPase subunit (RPT6a)
Length = 419
Score = 52.0 bits (119), Expect = 3e-07
Identities = 20/41 (48%), Positives = 32/41 (78%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
SK+DP V +M+VE+ PD TY +GG +QI++++EV+E P+
Sbjct: 141 SKVDPLVNLMKVEKVPDSTYDMIGGLDQQIKEIKEVIELPI 181
Score = 35.1 bits (77), Expect = 0.042
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = +2
Query: 374 KYIINVKQFAKFVVDLQDSVAPTDIEEGMRVGVDRNKYQIHIPLPRK 514
K ++ V K+VVD+ S+ T I RV + + Y +H+ LP K
Sbjct: 96 KVLVKVHPEGKYVVDIDKSIDITKITPSTRVALRNDSYVLHLVLPSK 142
>At5g58290.1 68418.m07297 26S proteasome AAA-ATPase subunit (RPT3)
identical to 26S proteasome AAA-ATPase subunit RPT3
GI:6652882 from [Arabidopsis thaliana]
Length = 408
Score = 48.4 bits (110), Expect = 4e-06
Identities = 18/38 (47%), Positives = 29/38 (76%)
Frame = +1
Query: 517 DPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
D +++++ EKPDV+Y+D+GGC Q +++RE VE PL
Sbjct: 138 DSSISLLSQSEKPDVSYNDIGGCDIQKQEIREAVELPL 175
>At4g29040.1 68417.m04153 26S proteasome AAA-ATPase subunit (RPT2a)
almost identical to 26S proteasome AAA-ATPase subunit
RPT2a (GI:6652880) {Arabidopsis thaliana}; Drosophila
melanogaster 26S proteasome subunit 4 ATPase,
PID:g1066065
Length = 443
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/40 (45%), Positives = 32/40 (80%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
++DP V++M+VE+ P +Y+D+GG + QI++++E VE PL
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPL 208
>At2g20140.1 68415.m02353 26S protease regulatory complex subunit 4,
putative similar to Swiss-Prot:P48601 26S protease
regulatory subunit 4 (P26S4) [Drosophila melanogaster]
Length = 443
Score = 47.2 bits (107), Expect = 1e-05
Identities = 18/40 (45%), Positives = 32/40 (80%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
++DP V++M+VE+ P +Y+D+GG + QI++++E VE PL
Sbjct: 169 EVDPMVSVMKVEKAPLESYADIGGLEAQIQEIKEAVELPL 208
>At3g05530.1 68416.m00606 26S proteasome AAA-ATPase subunit (RPT5a)
identical to GB:AAF22525 GI:6652886 from [Arabidopsis
thaliana]
Length = 424
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 499 TPASKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
T S+ D V M+V+EKP Y+D+GG ++QI++L E + P+
Sbjct: 148 TLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPM 191
>At1g09100.1 68414.m01016 26S protease regulatory subunit 6A,
putative identical to SP:O04019 from [Arabidopsis
thaliana]
Length = 423
Score = 41.9 bits (94), Expect = 4e-04
Identities = 18/44 (40%), Positives = 29/44 (65%)
Frame = +1
Query: 499 TPASKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
T S+ D V M+V+EKP Y+D+GG ++QI++L E + P+
Sbjct: 147 TLPSEYDSRVKAMEVDEKPTEDYNDIGGLEKQIQELVEAIVLPM 190
>At5g43010.1 68418.m05245 26S proteasome AAA-ATPase subunit (RPT4a)
gb|AAF22524.1
Length = 399
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
++DP V M E+ +++YS VGG +QI +LRE +E PL+
Sbjct: 120 EVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLM 160
>At1g45000.1 68414.m05158 26S proteasome regulatory complex subunit
p42D, putative similar to 26S proteasome regulatory
complex subunit p42D [Drosophila melanogaster]
gi|6434958|gb|AAF08391
Length = 399
Score = 41.1 bits (92), Expect = 6e-04
Identities = 18/41 (43%), Positives = 28/41 (68%)
Frame = +1
Query: 511 KIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
++DP V M E+ +++YS VGG +QI +LRE +E PL+
Sbjct: 120 EVDPVVYNMLHEDPGNISYSAVGGLGDQIRELRESIELPLM 160
>At3g09840.1 68416.m01174 cell division cycle protein 48 (CDC48A)
(CDC48) identical to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}
Length = 809
Score = 35.9 bits (79), Expect = 0.024
Identities = 15/29 (51%), Positives = 21/29 (72%)
Frame = +1
Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPL 630
E DV Y DVGG ++Q+ ++RE+VE PL
Sbjct: 199 ERLDDVGYDDVGGVRKQMAQIRELVELPL 227
Score = 33.5 bits (73), Expect = 0.13
Identities = 14/45 (31%), Positives = 26/45 (57%)
Frame = +1
Query: 496 HTPASKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
HT +P+ V E P+V+++D+GG + +L+E V+ P+
Sbjct: 456 HTALGNSNPSALRETVVEVPNVSWNDIGGLENVKRELQETVQYPV 500
>At1g05910.1 68414.m00620 cell division cycle protein 48-related /
CDC48-related similar to SP|P54609 Cell division cycle
protein 48 homolog {Arabidopsis thaliana}; contains Pfam
profiles PF00004: ATPase AAA family, PF00439:
Bromodomain
Length = 1210
Score = 35.1 bits (77), Expect = 0.042
Identities = 17/44 (38%), Positives = 26/44 (59%)
Frame = +1
Query: 502 PASKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPLL 633
P+SK + +Q+ E D+ + D+GG E I L+E+V PLL
Sbjct: 361 PSSKGGADIQPLQINE--DINFDDIGGLSEYINDLKEMVFFPLL 402
>At5g03340.1 68418.m00286 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain; supporting cDNA
gi|26449351|dbj|AK117125.1|
Length = 810
Score = 34.3 bits (75), Expect = 0.074
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPL 630
E +V Y DVGG ++Q+ ++RE+VE PL
Sbjct: 199 ERLDEVGYDDVGGVRKQMAQIRELVELPL 227
Score = 33.1 bits (72), Expect = 0.17
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 496 HTPASKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
HT +P+ V E P+V++ D+GG + +L+E V+ P+
Sbjct: 456 HTALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPV 500
>At3g53230.1 68416.m05865 cell division cycle protein 48, putative /
CDC48, putative very strong similarity to SP|P54609 Cell
division cycle protein 48 homolog {Arabidopsis
thaliana}; contains Pfam profiles PF00004: ATPase AAA
family, PF02359: Cell division protein 48 (CDC48)
N-terminal domain
Length = 815
Score = 34.3 bits (75), Expect = 0.074
Identities = 14/29 (48%), Positives = 21/29 (72%)
Frame = +1
Query: 544 EEKPDVTYSDVGGCKEQIEKLREVVETPL 630
E +V Y DVGG ++Q+ ++RE+VE PL
Sbjct: 200 ERLDEVGYDDVGGVRKQMAQIRELVELPL 228
Score = 29.9 bits (64), Expect = 1.6
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 499 TPASKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
T +P+ V E P+V++ D+GG + +L+E V+ P+
Sbjct: 458 TALGNSNPSALRETVVEVPNVSWEDIGGLENVKRELQETVQYPV 501
>At5g13580.1 68418.m01570 ABC transporter family protein
Length = 727
Score = 30.7 bits (66), Expect = 0.91
Identities = 24/83 (28%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + + + GS + HQPS
Sbjct: 234 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSALSVIKVLKRIAQSGSMVIMTLHQPS 293
Query: 458 CLLQYQWVRRSLVNRQQTLQTAS 390
L R ++R QT+ + S
Sbjct: 294 YRLLRLLDRLLFLSRGQTVFSGS 316
>At2g19780.1 68415.m02311 leucine-rich repeat family protein /
extensin family protein contains leucine rich-repeat
(LRR) domains Pfam:PF00560, INTERPRO:IPR001611; similar
to leucine-rich repeat/extensin 1 (GI:13809918)
[Arabidopsis thaliana]; contains similarity to disease
resistance protein [Lycopersicon esculentum]
gi|3894383|gb|AAC78591
Length = 402
Score = 29.9 bits (64), Expect = 1.6
Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 4/51 (7%)
Frame = -1
Query: 596 ICSLHPPTSLYVT----SGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPSC 456
+C+L +L V+ SGFSS C ++VG F G C G Y QP C
Sbjct: 320 VCTLRNLINLTVSFNFFSGFSSQCSSLSVGFDF-TGNCIPGKGYQRPQPDC 369
>At2g27600.1 68415.m03346 AAA-type ATPase family protein / vacuolar
sorting protein-related similar to SP|P46467 SKD1
protein (Vacuolar sorting protein 4b) {Mus musculus};
contains Pfam profiles PF00004: ATPase AAA family,
PF04212: MIT domain
Length = 435
Score = 29.5 bits (63), Expect = 2.1
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +1
Query: 508 SKIDPTVTMMQVEEKPDVTYSDVGGCKEQIEKLREVVETPL 630
SK+ + V EKP++ +SDV G + + L+E V P+
Sbjct: 112 SKLRAGLNSAIVREKPNIKWSDVAGLESAKQALQEAVILPV 152
>At3g55090.1 68416.m06118 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 720
Score = 28.7 bits (61), Expect = 3.7
Identities = 20/60 (33%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + GS I HQPS
Sbjct: 217 SGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTSAFMVVKVLKRIAESGSIIIMSIHQPS 276
>At4g15975.1 68417.m02425 zinc finger (C3HC4-type RING finger)
family protein contains Pfam domain, PF00097: Zinc
finger, C3HC4 type (RING finger)
Length = 235
Score = 28.3 bits (60), Expect = 4.9
Identities = 26/79 (32%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = -3
Query: 489 WYLLRSTPTLMPSSISVGATESCKSTTNFANCFTLIMYFGSFESALMIFVHRA-TCSGCS 313
WYLLRS+P ++ S T+ ST N S +L IF A T
Sbjct: 24 WYLLRSSPFNRTTAASTFFTDP-SSTPGGLN--------PSIIKSLPIFTFSAVTALFAM 74
Query: 312 FCSVCLSAARSHKAGGANP 256
CSVCLS + +++G P
Sbjct: 75 ECSVCLSEFKDNESGRVMP 93
>At2g39350.1 68415.m04830 ABC transporter family protein
Length = 740
Score = 28.3 bits (60), Expect = 4.9
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + GS + HQPS
Sbjct: 235 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTSAFMVVKVLKRIAQSGSIVIMSIHQPS 294
>At1g43000.1 68414.m04950 zinc-binding family protein similar to
zinc-binding protein [Pisum sativum] GI:16117799;
contains Pfam profile PF04640 : Protein of unknown
function, DUF597
Length = 216
Score = 28.3 bits (60), Expect = 4.9
Identities = 10/18 (55%), Positives = 14/18 (77%)
Frame = -3
Query: 327 CSGCSFCSVCLSAARSHK 274
CSG +FCS CL+ R+H+
Sbjct: 42 CSGNAFCSSCLAHHRTHR 59
>At3g55130.1 68416.m06122 ABC transporter family protein breast
cancer resistance protein 1 BCRP1, Mus musculus,
EMBL:NP_036050
Length = 725
Score = 27.9 bits (59), Expect = 6.4
Identities = 22/83 (26%), Positives = 36/83 (43%), Gaps = 3/83 (3%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + GS + HQPS
Sbjct: 226 SGGERRRVSIGIDIIHDPIVLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSIVIMSIHQPS 285
Query: 458 CLLQYQWVRRSLVNRQQTLQTAS 390
+ R +++R +++ S
Sbjct: 286 ARIVELLDRLIILSRGKSVFNGS 308
>At3g55110.1 68416.m06120 ABC transporter family protein ATP-binding
cassette-sub-family G-member 2, Mus musculus,
EMBL:AF140218
Length = 708
Score = 27.9 bits (59), Expect = 6.4
Identities = 19/60 (31%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Frame = -1
Query: 629 SGVSTTSLSFSICSLHPPTSLYV---TSGFSSTCIMVTVGSIFEAGVCGSGIYYDPHQPS 459
SG +S I +H P L++ TSG ST + V + GS + HQPS
Sbjct: 218 SGGERRRVSIGIDIIHDPILLFLDEPTSGLDSTNAFMVVQVLKRIAQSGSVVIMSIHQPS 277
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,586,385
Number of Sequences: 28952
Number of extensions: 267872
Number of successful extensions: 745
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 744
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1403159472
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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