Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0342
         (618 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like pr...    25   0.67 
EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B pro...    21   6.3  
DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7 prot...    21   6.3  

>AY600514-1|AAT11862.1|  242|Tribolium castaneum iroquois-like
           protein protein.
          Length = 242

 Score = 24.6 bits (51), Expect = 0.67
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = -1

Query: 270 AARRVLRSRGGTRSTERWLRRHHRRP 193
           AARR   +R  T + + WL  H + P
Sbjct: 85  AARRKNATRESTATLKAWLNEHKKNP 110


>EF125544-1|ABL73928.1|  279|Tribolium castaneum obstractor B
           protein.
          Length = 279

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 12/33 (36%), Positives = 14/33 (42%)
 Frame = -1

Query: 321 QFPRPENSRWPSPLPTSAARRVLRSRGGTRSTE 223
           Q    EN   P P PT  +RR  R    T+  E
Sbjct: 243 QLKELENPPTPKPRPTKVSRRKPRPPRPTQVEE 275


>DQ659247-1|ABG47445.1|  980|Tribolium castaneum chitinase 7
           protein.
          Length = 980

 Score = 21.4 bits (43), Expect = 6.3
 Identities = 6/13 (46%), Positives = 8/13 (61%)
 Frame = +1

Query: 370 FRCVRARYHHLPC 408
           + C   R HH+PC
Sbjct: 935 YMCEGERKHHMPC 947


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,965
Number of Sequences: 336
Number of extensions: 2804
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15770591
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)