Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0342
         (618 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase p...   140   1e-35
AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase p...   140   1e-35
AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   4.2  
M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee homeobox-...    21   9.6  

>AY568009-1|AAS73299.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  140 bits (339), Expect = 1e-35
 Identities = 64/84 (76%), Positives = 67/84 (79%)
 Frame = +3

Query: 3   IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYF 182
           ++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF
Sbjct: 56  MIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF 115

Query: 183 XXXXXXXXXXXXTSLCFVYPLDFA 254
                       TSLCFVYPLDFA
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFA 139



 Score =  136 bits (330), Expect = 1e-34
 Identities = 73/116 (62%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
 Frame = +2

Query: 257 TRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTA 436
           TRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTA
Sbjct: 141 TRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200

Query: 437 RGCCPTLRTHP-L*SAGPSLRP*PQRRYHLLSLRHSP*RMMMQSGRAKSDILYKNT 601
           RG  P  +  P L S G +                   RMMMQSGRAKS+ILYK+T
Sbjct: 201 RGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKST 256



 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 442 MLPDPKNTPIVISWAIAQTVTTAP--VSSPIPSTQSVAHDDAVWSCQERYPVQEHIHCWA 615
           MLPDPK TP +ISW IAQ VTT    VS P  + +      +    +     +  +HCWA
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQS-GRAKSEILYKSTLHCWA 261

Query: 616 T 618
           T
Sbjct: 262 T 262



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 293 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 430
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY332626-1|AAQ24500.1|  300|Apis mellifera ADP/ATP translocase
           protein.
          Length = 300

 Score =  140 bits (339), Expect = 1e-35
 Identities = 64/84 (76%), Positives = 67/84 (79%)
 Frame = +3

Query: 3   IVDAFVRIPKEQGLLSFWRGNFANVIRYFPTQALNFAFKDKYKQVFLGGVDKKTQFWRYF 182
           ++D FVRIPKEQG LS+WRGN ANVIRYFPTQALNFAFKDKYKQVFLGGVDK TQF RYF
Sbjct: 56  MIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKDKYKQVFLGGVDKNTQFLRYF 115

Query: 183 XXXXXXXXXXXXTSLCFVYPLDFA 254
                       TSLCFVYPLDFA
Sbjct: 116 VGNLASGGAAGATSLCFVYPLDFA 139



 Score =  136 bits (330), Expect = 1e-34
 Identities = 73/116 (62%), Positives = 84/116 (72%), Gaps = 1/116 (0%)
 Frame = +2

Query: 257 TRLAADVGKGDGQREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYDTA 436
           TRLAADVGK  G+REF+GLGNC++KIFK+DG+ GLYRGFGVSVQGIIIYRA+YFGFYDTA
Sbjct: 141 TRLAADVGKAGGEREFTGLGNCLTKIFKADGITGLYRGFGVSVQGIIIYRAAYFGFYDTA 200

Query: 437 RGCCPTLRTHP-L*SAGPSLRP*PQRRYHLLSLRHSP*RMMMQSGRAKSDILYKNT 601
           RG  P  +  P L S G +                   RMMMQSGRAKS+ILYK+T
Sbjct: 201 RGMLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQSGRAKSEILYKST 256



 Score = 46.0 bits (104), Expect = 3e-07
 Identities = 25/61 (40%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +1

Query: 442 MLPDPKNTPIVISWAIAQTVTTAP--VSSPIPSTQSVAHDDAVWSCQERYPVQEHIHCWA 615
           MLPDPK TP +ISW IAQ VTT    VS P  + +      +    +     +  +HCWA
Sbjct: 203 MLPDPKKTPFLISWGIAQVVTTVAGIVSYPFDTVRRRMMMQS-GRAKSEILYKSTLHCWA 261

Query: 616 T 618
           T
Sbjct: 262 T 262



 Score = 23.8 bits (49), Expect = 1.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +2

Query: 293 QREFSGLGNCISKIFKSDGLIGLYRGFGVSVQGIIIYRASYFGFYD 430
           ++ + G+ +C  +I K  G +  +RG   +V      +A  F F D
Sbjct: 50  EQRYKGMIDCFVRIPKEQGFLSYWRGNLANVIRYFPTQALNFAFKD 95


>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 4.2
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +3

Query: 558 CSLVVPRAISCTRTHPLLGY 617
           CSL    A+SC  T  LL Y
Sbjct: 97  CSLFPGNALSCKETFSLLYY 116


>M29494-1|AAA27729.1|   74|Apis mellifera protein ( Bee
          homeobox-containing gene,partial cds, clone H15. ).
          Length = 74

 Score = 21.0 bits (42), Expect = 9.6
 Identities = 8/12 (66%), Positives = 8/12 (66%)
 Frame = -1

Query: 39 PAPWGCARRRRR 4
          P P GC RRR R
Sbjct: 1  PGPNGCPRRRGR 12


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,876
Number of Sequences: 438
Number of extensions: 3883
Number of successful extensions: 14
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18337950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)