Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0341
         (822 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomy...    31   0.26 
SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyc...    29   1.1  
SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces pomb...    27   2.4  
SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|...    27   3.2  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    26   5.6  
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    26   5.6  
SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces pom...    26   7.4  
SPAC1093.03 |||inositol polyphosphate phosphatase |Schizosacchar...    25   9.8  

>SPCC1223.11 |ptc2||protein phosphatase 2C Ptc2 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 370

 Score = 30.7 bits (66), Expect = 0.26
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +3

Query: 321 RXAAFAKEHLMDSIVKQRQFWSDNDEDVLKA 413
           R A + ++HL D I  Q  FW  N ++ LK+
Sbjct: 69  RVAKYCRQHLPDIIKSQPSFWKGNYDEALKS 99



 Score = 27.1 bits (57), Expect = 3.2
 Identities = 8/11 (72%), Positives = 11/11 (100%)
 Frame = +1

Query: 286 AFFGIYDGHGG 318
           +FFG++DGHGG
Sbjct: 57  SFFGVFDGHGG 67


>SPAC4A8.03c |ptc4||protein phosphatase 2C Ptc4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 383

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 232 RFVFRCLSQTEDERDLEYAFF-GIYDGHGGSE 324
           R  +  L+  +D  + +  FF G++DGHGG+E
Sbjct: 67  RMAYGYLNNLKDTTNRDSPFFYGLFDGHGGTE 98


>SPBC1703.06 |pof10||F-box protein Pof10|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 662

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 9/24 (37%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = -3

Query: 580 KYDCRIADMSNIYFS-SSNKSHTG 512
           +YDCR+  ++N+Y+  SS + ++G
Sbjct: 118 QYDCRVGQLTNLYYDFSSGRLYSG 141


>SPAC13C5.06c |mug121||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 177

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 15/72 (20%), Positives = 29/72 (40%)
 Frame = -3

Query: 490 KPVTVLGHFSSSFHMFKWVSI*PFLMAFRTSSSLSDQNCRCFTIESIRCSLANAAXRCLH 311
           KPVT  G  +       W+ +  ++M F +   L  QN   +  E I   +     +C+ 
Sbjct: 51  KPVTFFGSVTEHVSNSWWIKLYDYMMTFISGEKLCMQNV-AYEFEDISLCMDVVGSKCIP 109

Query: 310 VRRKCRKKRTLN 275
             +    ++ +N
Sbjct: 110 TLQSTDIEKVVN 121


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 16/57 (28%), Positives = 25/57 (43%)
 Frame = -2

Query: 293 KKAYSKSRSSSVCDKQRKTNLPCTFSRLGYNAPSRVN*RRLTLAFYNTQHLNFQWKN 123
           KK    S     CD+  K N+PC +     N+  R + R   +      HLN Q+++
Sbjct: 77  KKKVKCSGERPSCDQCLKHNIPCIYKS---NSTKRSHSRHEEIHHQQQLHLNHQYQH 130


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 26.2 bits (55), Expect = 5.6
 Identities = 8/12 (66%), Positives = 10/12 (83%)
 Frame = +1

Query: 289 FFGIYDGHGGSE 324
           FF +YDGHGG +
Sbjct: 57  FFAVYDGHGGDK 68


>SPBC29A3.09c |||AAA family ATPase Gcn20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 15/33 (45%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = +3

Query: 510 QPVWLLLDEEKYMLDMSAIR--QSYLVTKKKVL 602
           QP  LLLDE   MLD+ +I     YL T K ++
Sbjct: 372 QPDLLLLDEPSNMLDVPSIAFLSEYLQTYKNIV 404


>SPAC1093.03 |||inositol polyphosphate phosphatase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 832

 Score = 25.4 bits (53), Expect = 9.8
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = +2

Query: 488 LAKHSRHTASVAFIRRGKIYVGHVGDSAIILGYQKEGTIKLFFSPILVTSMGYTRFNELV 667
           +A+ SRH A   F+RRG    G+V +         +G+   F  PI  T+ G   +   V
Sbjct: 229 IARRSRHFAGARFLRRGIRDDGYVANEVETEQIVFDGSASSF--PISSTTPGIPCYTSYV 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,311,674
Number of Sequences: 5004
Number of extensions: 68887
Number of successful extensions: 183
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 183
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 402440190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)