Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0341
         (822 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)              55   8e-08
SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)                  35   0.069
SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)                    31   0.85 
SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)               31   1.5  
SB_21228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_15443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 142

 Score = 54.8 bits (126), Expect = 8e-08
 Identities = 28/66 (42%), Positives = 41/66 (62%), Gaps = 3/66 (4%)
 Frame = +3

Query: 327 AAFAKEHLMDSIVKQRQFWSDNDEDVLKAIRNGYMLTHLNMWKELEKWPKTVTG---LPS 497
           A FA+  L ++I KQR F+S + E V+KAI+ G+M TH +MWK L   P+ + G   +P 
Sbjct: 68  AVFARSRLWETIKKQRGFYSSDPEHVVKAIKEGFMATHRSMWKVL--GPEMIPGPETIPK 125

Query: 498 TAGTQP 515
           +  T P
Sbjct: 126 STPTDP 131



 Score = 31.9 bits (69), Expect = 0.65
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +2

Query: 140 LSVVCYKMPASIGVNLRVTGHCSQGGRKYMEDLFSVAYHK 259
           LS  C K   +  + LRV+    QGGRK MED  S+ + +
Sbjct: 5   LSSKCPKAKKTSRLILRVSSEAHQGGRKCMEDFTSILFDR 44



 Score = 28.3 bits (60), Expect = 8.0
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 271 RDLEYAFFGIYDGHGGSEXQRSPKNT*W 354
           +D+  AF  ++DGHGG E     ++  W
Sbjct: 49  KDIGQAFIAVFDGHGGREAAVFARSRLW 76


>SB_13499| Best HMM Match : PP2C (HMM E-Value=1.8e-06)
          Length = 177

 Score = 35.1 bits (77), Expect = 0.069
 Identities = 18/46 (39%), Positives = 26/46 (56%)
 Frame = +2

Query: 488 LAKHSRHTASVAFIRRGKIYVGHVGDSAIILGYQKEGTIKLFFSPI 625
           L   S  T +V  IR  K++V HVGDS  +L  ++ GT +L   P+
Sbjct: 10  LPSTSGTTVTVIIIRGHKMFVAHVGDSGAVLASKEPGTKRLEAYPL 55



 Score = 29.1 bits (62), Expect = 4.6
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 468 WPKTVTGLPSTAGTQPVWLLLDEEK 542
           WPKT  GLPST+GT    +++   K
Sbjct: 3   WPKTRHGLPSTSGTTVTVIIIRGHK 27


>SB_17777| Best HMM Match : DUF702 (HMM E-Value=7.8)
          Length = 504

 Score = 31.5 bits (68), Expect = 0.85
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = +2

Query: 386 GQRRGCSKSHQKWLYADPLE 445
           G++R C K  QKW YA PLE
Sbjct: 409 GKKRVCKKQKQKWTYAIPLE 428


>SB_2392| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 652

 Score = 30.7 bits (66), Expect = 1.5
 Identities = 20/54 (37%), Positives = 25/54 (46%)
 Frame = +2

Query: 284 TLFSAFTTDMEAAXSSVRQRTPNGFNCKTATILVGQRRGCSKSHQKWLYADPLE 445
           TLF A T+  + A   +R R      C+ +       R C   HQKW YA PLE
Sbjct: 441 TLFMAMTSQPKVAGLDLRYR------CRRSR----GGRSCKSVHQKWTYAIPLE 484


>SB_21228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 125

 Score = 28.3 bits (60), Expect = 8.0
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = +2

Query: 386 GQRRGCSKSHQKWLYADPLE 445
           G    C K +QKW YA PLE
Sbjct: 10  GANEKCDKINQKWTYAIPLE 29


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,350,241
Number of Sequences: 59808
Number of extensions: 508123
Number of successful extensions: 1075
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 968
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1074
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2299585728
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)