Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0341
         (822 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical...    68   9e-12
Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical pr...    30   1.7  
U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical p...    29   3.0  
U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical p...    29   3.0  
Z70038-5|CAD36503.2|  192|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical pr...    28   9.3  
Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical p...    28   9.3  
AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring fin...    28   9.3  
AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical ...    28   9.3  

>AC026301-13|AAP13737.1|  766|Caenorhabditis elegans Hypothetical
           protein Y54F10BM.1 protein.
          Length = 766

 Score = 67.7 bits (158), Expect = 9e-12
 Identities = 27/64 (42%), Positives = 45/64 (70%)
 Frame = +3

Query: 318 QRXAAFAKEHLMDSIVKQRQFWSDNDEDVLKAIRNGYMLTHLNMWKELEKWPKTVTGLPS 497
           +  + + + HL+ +I K ++F S++DED+L+AIR G+++TH  M    ++WP T +G PS
Sbjct: 63  EHASEYVRRHLLMNITKNQKFESNSDEDILEAIRQGFLMTHEQMRHVYDEWPYTASGYPS 122

Query: 498 TAGT 509
           TAGT
Sbjct: 123 TAGT 126



 Score = 54.0 bits (124), Expect = 1e-07
 Identities = 49/157 (31%), Positives = 69/157 (43%), Gaps = 8/157 (5%)
 Frame = +2

Query: 158 KMPASIGVNLRVTGHCSQGGRKYMEDLFSVAYHKLRMSGI*STLFSAFTTDM-EAAXSSV 334
           + P   G N+R+T   SQGGR+YMED   +   ++    +  T    F     E A   V
Sbjct: 10  RTPIQFGENMRITVAASQGGRRYMEDRCVIHTERINNGLLDWTFVGVFDGHGGEHASEYV 69

Query: 335 RQR-----TPNG-FNCKT-ATILVGQRRGCSKSHQKWLYADPLEHVERARKMA*DSDRLA 493
           R+      T N  F   +   IL   R+G   +H++      + HV         +    
Sbjct: 70  RRHLLMNITKNQKFESNSDEDILEAIRQGFLMTHEQ------MRHVYDEWPYT--ASGYP 121

Query: 494 KHSRHTASVAFIRRGKIYVGHVGDSAIILGYQKEGTI 604
             +  T S  FIR GK+Y GHVGDSAI LG  + G +
Sbjct: 122 STAGTTVSCVFIRNGKLYTGHVGDSAIFLGTVENGEL 158



 Score = 29.5 bits (63), Expect = 3.0
 Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 2/27 (7%)
 Frame = +1

Query: 244 RCLSQTEDERD--LEYAFFGIYDGHGG 318
           RC+  TE   +  L++ F G++DGHGG
Sbjct: 36  RCVIHTERINNGLLDWTFVGVFDGHGG 62


>Z46343-1|CAA86456.2|  356|Caenorhabditis elegans Hypothetical
           protein T23F11.1 protein.
          Length = 356

 Score = 30.3 bits (65), Expect = 1.7
 Identities = 11/17 (64%), Positives = 14/17 (82%)
 Frame = +1

Query: 274 DLEYAFFGIYDGHGGSE 324
           D + AFF +YDGHGGS+
Sbjct: 49  DPKCAFFAVYDGHGGSK 65


>U00051-14|AAM29692.1|  469|Caenorhabditis elegans Hypothetical
           protein F42G9.1b protein.
          Length = 469

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 280 EYAFFGIYDGHGGSEXQR 333
           ++  FG+YDGHGG+E  +
Sbjct: 27  DWHMFGVYDGHGGTEVSK 44


>U00051-13|AAA91358.1|  491|Caenorhabditis elegans Hypothetical
           protein F42G9.1a protein.
          Length = 491

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = +1

Query: 280 EYAFFGIYDGHGGSEXQR 333
           ++  FG+YDGHGG+E  +
Sbjct: 49  DWHMFGVYDGHGGTEVSK 66


>Z70038-5|CAD36503.2|  192|Caenorhabditis elegans Hypothetical
           protein ZK1067.8 protein.
          Length = 192

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +3

Query: 516 VWLLLDEEKYMLDMSAIRQSYLVTKKKV 599
           V +LLD+E+  L    +R+ YL+ KK +
Sbjct: 69  VGILLDDEREFLQYQEVREDYLLLKKLI 96


>Z35662-1|CAA84721.1| 4307|Caenorhabditis elegans Hypothetical
           protein F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 646 ITHRGYQNR*EKKL--YSTFFLVTKYDCRIADMSNIYFSSSNKSHTGCVPAVLG 491
           +  +GY+   +  L  +ST   V   D  I   S IYFS  N+SH   V  V G
Sbjct: 155 VGEQGYEAEIDDDLEPFSTVLRVEASDADIGINSAIYFSLVNRSHDFIVEPVTG 208


>Z35599-4|CAA84661.1| 4307|Caenorhabditis elegans Hypothetical
           protein F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 646 ITHRGYQNR*EKKL--YSTFFLVTKYDCRIADMSNIYFSSSNKSHTGCVPAVLG 491
           +  +GY+   +  L  +ST   V   D  I   S IYFS  N+SH   V  V G
Sbjct: 155 VGEQGYEAEIDDDLEPFSTVLRVEASDADIGINSAIYFSLVNRSHDFIVEPVTG 208


>Z34802-10|CAA84339.1| 4307|Caenorhabditis elegans Hypothetical
           protein F25F2.2 protein.
          Length = 4307

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 19/54 (35%), Positives = 25/54 (46%), Gaps = 2/54 (3%)
 Frame = -3

Query: 646 ITHRGYQNR*EKKL--YSTFFLVTKYDCRIADMSNIYFSSSNKSHTGCVPAVLG 491
           +  +GY+   +  L  +ST   V   D  I   S IYFS  N+SH   V  V G
Sbjct: 155 VGEQGYEAEIDDDLEPFSTVLRVEASDADIGINSAIYFSLVNRSHDFIVEPVTG 208


>AF040651-1|AAB95013.4|  691|Caenorhabditis elegans Nhl (ring finger
           b-box coiled coil)domain containing protein 3 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 10/18 (55%), Positives = 14/18 (77%)
 Frame = -1

Query: 216 PPWLQCPVTRKLTPIDAG 163
           PP L+CP+ R++ PI AG
Sbjct: 65  PPTLRCPLCREVCPIPAG 82


>AF016674-6|AAB66129.1|  530|Caenorhabditis elegans Hypothetical
           protein C03H5.6 protein.
          Length = 530

 Score = 27.9 bits (59), Expect = 9.3
 Identities = 16/55 (29%), Positives = 22/55 (40%)
 Frame = -1

Query: 447 CSSGSAYNHF*WLLEHPRRCPTRIVAVLQLNPLGVLWRTLLFAASMSVVNAEKSV 283
           C S   Y+    L+++P    T    V Q    G  W+ L+F    S  N  K V
Sbjct: 343 CPSCKTYSSDTTLMKNPNNVTTGTTTVTQGYGSGTAWKNLIFTNQTSQTNHTKIV 397


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,377,215
Number of Sequences: 27780
Number of extensions: 387596
Number of successful extensions: 1026
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1026
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 2029935014
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)