Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0340
(597 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc... 59 6e-10
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch... 54 1e-08
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha... 53 3e-08
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo... 53 4e-08
SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal |Schizos... 53 4e-08
SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1 |Schizosaccharo... 52 5e-08
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc... 52 8e-08
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc... 50 3e-07
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|... 44 1e-05
SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein |S... 33 0.042
SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces ... 27 2.7
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.7
SPAC17G8.13c |mst2||histone acetyltransferase Mst2|Schizosacchar... 26 3.6
SPCC126.09 |||vacuolar membrane zinc transporter |Schizosaccharo... 25 8.4
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 25 8.4
>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1428
Score = 58.8 bits (136), Expect = 6e-10
Identities = 27/80 (33%), Positives = 46/80 (57%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ R L E+ L +K+ ++G + L +PP +I A L ++G L + LT L
Sbjct: 1047 EILRLNLQEVVLRVKMCQMGDVQDVLGKALDPPSSTNIIRALEKLHQVGALSENEKLTKL 1106
Query: 434 GTILAKLPIEPRLGKMMVLG 493
G L++LP++ LGK++VLG
Sbjct: 1107 GKFLSQLPVDANLGKILVLG 1126
Score = 45.6 bits (103), Expect = 6e-06
Identities = 23/76 (30%), Positives = 39/76 (51%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++LSTNIAET +TI DV VID+ + + S +++ + SK N +Q
Sbjct: 962 KIVLSTNIAETGVTIPDVTCVIDTGVHREMRYNSRRHLSRLTDTFVSKANAKQRSGRAGR 1021
Query: 183 XXXXXCFTLCTYARYE 230
C+ L + +++
Sbjct: 1022 VQEGICYHLFSKFKHD 1037
>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1327
Score = 54.4 bits (125), Expect = 1e-08
Identities = 29/77 (37%), Positives = 41/77 (53%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K+I +TNIAETSITI+DVV VIDS + K + ++ ++ WAS+ +Q
Sbjct: 866 KIICATNIAETSITIDDVVAVIDSGRVKQIDYDVERDLVTFKETWASRAACQQRRGRAGR 925
Query: 183 XXXXXCFTLCTYARYEK 233
C+ L T EK
Sbjct: 926 VKKGICYKLYTRGFEEK 942
Score = 46.4 bits (105), Expect = 3e-06
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Frame = +2
Query: 311 GAIGHFLSXXXEPPPLDAVIE-AEXLLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMV 487
G+I F++ +PP DA ++ A L ++G L + LT LG L LPI+ +LGK++V
Sbjct: 981 GSIKKFMNSLIDPPN-DATVDLALKKLIQVGALTVSEDLTGLGEYLVSLPIDLKLGKLLV 1039
Query: 488 LGFVLGVETP 517
G + G P
Sbjct: 1040 FGSIFGYLEP 1049
>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
Prh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 719
Score = 53.2 bits (122), Expect = 3e-08
Identities = 30/78 (38%), Positives = 43/78 (55%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+LSTNIAETS+TI+ + YVID+ AK+K F S + S S++ Q
Sbjct: 365 KVVLSTNIAETSVTISGIRYVIDTGLAKIKQFNSKLGLESLTVQPISQSAAMQRSGRAGR 424
Query: 183 XXXXXCFTLCTYARYEKL 236
C+ + T A ++KL
Sbjct: 425 EAAGQCYRIYTEADFDKL 442
>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1055
Score = 52.8 bits (121), Expect = 4e-08
Identities = 29/75 (38%), Positives = 39/75 (52%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+L+TNIAETSITI+ V +VIDS K ++ M S +V S+ + +Q
Sbjct: 688 KVVLATNIAETSITIDGVNFVIDSGFVKQNMYNPRTGMESLVSVPCSRASADQRAGRAGR 747
Query: 183 XXXXXCFTLCTYARY 227
CF L T Y
Sbjct: 748 VGPGKCFRLYTRRTY 762
>SPAC20H4.09 |||ATP-dependent RNA helicase, spliceosomal
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 647
Score = 52.8 bits (121), Expect = 4e-08
Identities = 31/87 (35%), Positives = 43/87 (49%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVI STNIAETSITI+ +VYV+DS K +++ + + V SK++ Q
Sbjct: 297 KVIFSTNIAETSITIDGIVYVVDSGFNKQRIYNPYTRTSKLINVPISKSSAIQRSGRAGR 356
Query: 183 XXXXXCFTLCTYARYEKLEEHLAAKCL 263
F L T Y ++E A L
Sbjct: 357 TMRGKVFRLYTEKAYSLMKEEFEADIL 383
>SPAPB1A10.06c |||ATP-dependent RNA helicase Dhr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1183
Score = 52.4 bits (120), Expect = 5e-08
Identities = 24/74 (32%), Positives = 41/74 (55%)
Frame = +3
Query: 9 ILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXXXX 188
I++TN+AETSITI ++ YV+D KAK +++ ++ + W SK N +Q
Sbjct: 731 IVATNVAETSITIPNIRYVVDCGKAKERVYNEKTSVQKFEVRWISKANADQRAGRAGRTG 790
Query: 189 XXXCFTLCTYARYE 230
C+ L + A ++
Sbjct: 791 PGHCYRLYSSAVFD 804
Score = 48.8 bits (111), Expect = 6e-07
Identities = 24/80 (30%), Positives = 43/80 (53%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ RTP+ + L +K + + I +F P + ++ LL LG +D+E LT L
Sbjct: 814 EILRTPVESIVLQMKNMNIDNIANF--PFPTSPGRSRLEKSLKLLSNLGAIDSEGVLTKL 871
Query: 434 GTILAKLPIEPRLGKMMVLG 493
G ++ P+ PR KM+++G
Sbjct: 872 GEQMSLFPLSPRFSKMLIIG 891
>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
Prp43|Schizosaccharomyces pombe|chr 2|||Manual
Length = 735
Score = 51.6 bits (118), Expect = 8e-08
Identities = 27/77 (35%), Positives = 40/77 (51%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV++STNIAETS+TI+ +VYV+D +K K++ + S SK + +Q
Sbjct: 353 KVVISTNIAETSLTIDGIVYVVDPGFSKQKIYNPRIRVESLLVSPISKASAQQRAGRAGR 412
Query: 183 XXXXXCFTLCTYARYEK 233
CF L T + K
Sbjct: 413 TRPGKCFRLYTEEAFRK 429
Score = 45.2 bits (102), Expect = 7e-06
Identities = 24/78 (30%), Positives = 40/78 (51%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ R+ L L +K L + + HF +PP + ++ A L L CLD LTPL
Sbjct: 438 EILRSNLSSTVLELKKLGIDDLVHF--DYMDPPAPETMMRALEELNYLNCLDDNGDLTPL 495
Query: 434 GTILAKLPIEPRLGKMMV 487
G ++ P++P L M++
Sbjct: 496 GRKASEFPLDPNLAVMLI 513
>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
Prp22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1168
Score = 49.6 bits (113), Expect = 3e-07
Identities = 34/97 (35%), Positives = 50/97 (51%), Gaps = 6/97 (6%)
Frame = +2
Query: 233 T*GTFGRQMFRTPLHELA---LSIKLLRLGAIG--HFLSXXX-EPPPLDAVIEAEXLLRE 394
T + +M +P+ E+ LS +L L A+G L+ +PPP +I A L
Sbjct: 850 TESAYRNEMLPSPIPEIQRQNLSHTILMLKAMGINDLLNFDFMDPPPAQTMIAALQNLYA 909
Query: 395 LGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLG 505
L LD E LTPLG +A P+EP+L K+++ LG
Sbjct: 910 LSALDDEGLLTPLGRKMADFPMEPQLSKVLITSVELG 946
Score = 44.0 bits (99), Expect = 2e-05
Identities = 24/75 (32%), Positives = 34/75 (45%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+++TNIAETS+TI+ + YV+D K F M S S+ Q
Sbjct: 780 KVVIATNIAETSLTIDGIYYVVDPGFVKQSCFDPKLGMDSLIVTPISQAQARQRSGRAGR 839
Query: 183 XXXXXCFTLCTYARY 227
C+ L T + Y
Sbjct: 840 TGPGKCYRLYTESAY 854
>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
Prp16|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1173
Score = 44.4 bits (100), Expect = 1e-05
Identities = 19/53 (35%), Positives = 34/53 (64%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQ 161
KV+++TNIAETS+T++ + YV+D+ K+K++ S + + S+ N Q
Sbjct: 760 KVVVATNIAETSLTVHGISYVVDTGYCKLKMYNSKLGIDTLQVTPISQANANQ 812
>SPAC589.12 ||SPAC688.01|glycosylceramide biosynthesis protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 971
Score = 32.7 bits (71), Expect = 0.042
Identities = 17/52 (32%), Positives = 22/52 (42%)
Frame = -3
Query: 211 HSVKHTPGRTRPARXLRCSRLVLLAHTVAYDVMLLWDVNSFIFALHESMTYT 56
H KH PG S L+ + +D L WD +F LH S TY+
Sbjct: 183 HKFKHIPGAYTVYAFFEWS---LILWDILFDSALYWDFKPLVFNLHTSKTYS 231
>SPAC144.07c |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 315
Score = 26.6 bits (56), Expect = 2.7
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 60 YVIDSCKAKMKLFTSHNNM 116
YVI C +++LFT+HN++
Sbjct: 99 YVIFDCPGQVELFTNHNSL 117
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 2.7
Identities = 19/45 (42%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Frame = -3
Query: 424 ERVLGVQTAQLAEQXLRLDDSVQRRGLRXXRQEVTDR--TQAEEL 296
ERV ++T Q + + LR+D S+Q L +QE DR Q EEL
Sbjct: 424 ERV--IETLQRSNELLRMDISMQNEALLLRKQE-NDRLVKQVEEL 465
>SPAC17G8.13c |mst2||histone acetyltransferase
Mst2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 407
Score = 26.2 bits (55), Expect = 3.6
Identities = 14/42 (33%), Positives = 21/42 (50%)
Frame = -3
Query: 208 SVKHTPGRTRPARXLRCSRLVLLAHTVAYDVMLLWDVNSFIF 83
S+ G+ +P + C L LLA + ML +DV F+F
Sbjct: 171 SIFEVDGQRQP---IYCQNLCLLAKMFLHSKMLYYDVEPFLF 209
>SPCC126.09 |||vacuolar membrane zinc transporter
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 418
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/34 (29%), Positives = 17/34 (50%)
Frame = +1
Query: 256 NV*DSATRACFEHKAPPPGCDRSLPVEXXGAPAA 357
+V D + H++PP C R E G+P++
Sbjct: 155 SVSDPSPSTAQNHRSPPASCKRLSSCESSGSPSS 188
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/29 (34%), Positives = 16/29 (55%)
Frame = +2
Query: 353 PLDAVIEAEXLLRELGCLDAEDALTPLGT 439
PLD +++ L++ +GC E T GT
Sbjct: 192 PLDFIMKKNELMKYIGCFGVEAYSTASGT 220
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,175,626
Number of Sequences: 5004
Number of extensions: 36516
Number of successful extensions: 100
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 93
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 100
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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