BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e96h0340 (597 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26) 111 4e-25 SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) 52 3e-07 SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06 SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) 50 1e-06 SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) 46 2e-05 SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22) 46 2e-05 SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) 46 3e-05 SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21) 45 4e-05 SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) 44 9e-05 SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16) 42 5e-04 SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) 40 0.001 SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17) 38 0.006 SB_6014| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.057 SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) 32 0.40 SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) 31 0.93 SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.6 SB_56219| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.9 SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06) 28 6.6 SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019) 28 6.6 >SB_38249| Best HMM Match : HA2 (HMM E-Value=1.6e-26) Length = 355 Score = 111 bits (267), Expect = 4e-25 Identities = 54/87 (62%), Positives = 65/87 (74%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182 K+ILSTNIAETSITI+DVV+VIDS KAK+KLFTSHNNMT+YATVWAS+TN+EQ Sbjct: 102 KIILSTNIAETSITIDDVVFVIDSVKAKVKLFTSHNNMTNYATVWASQTNMEQRRGRAGR 161 Query: 183 XXXXXCFTLCTYARYEKLEEHLAAKCL 263 F LC+ AR ++L EH + L Sbjct: 162 VRPGFAFHLCSRARADRLAEHATPEIL 188 Score = 108 bits (260), Expect = 3e-24 Identities = 50/82 (60%), Positives = 66/82 (80%) Frame = +2 Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433 ++ RTPLHELAL+IKLL+LG I FL+ EPPPLDAV+E+ +L+++ LD + LTPL Sbjct: 186 EILRTPLHELALTIKLLKLGDITAFLNNAIEPPPLDAVVESVAMLKDMEALDTNENLTPL 245 Query: 434 GTILAKLPIEPRLGKMMVLGFV 499 G +LAKLPIEPRLGKM++LG + Sbjct: 246 GYMLAKLPIEPRLGKMVILGCI 267 >SB_44906| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 871 Score = 52.4 bits (120), Expect = 3e-07 Identities = 31/82 (37%), Positives = 42/82 (51%), Gaps = 1/82 (1%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182 +VIL+TNIAETS+TI+ ++YVID K K + M S SK + Q Sbjct: 312 QVILATNIAETSLTIDGIIYVIDPGFCKQKSYNPRTGMESLVVTPISKASANQRAGRAGR 371 Query: 183 XXXXXCFTLCT-YARYEKLEEH 245 CF L T +A +LEE+ Sbjct: 372 VNAGKCFRLYTAWAYNNELEEN 393 >SB_49454| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 696 Score = 50.4 bits (115), Expect = 1e-06 Identities = 31/80 (38%), Positives = 38/80 (47%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182 KVILSTNIAETS+TI V YVID+ K K F + SK Q Sbjct: 333 KVILSTNIAETSVTIPGVKYVIDTGYVKAKGFHPKTGLDMLRVQPVSKAQARQRLGRAGR 392 Query: 183 XXXXXCFTLCTYARYEKLEE 242 C+ L T ++E+L E Sbjct: 393 ECSGVCYRLYTEEQFEQLAE 412 Score = 35.1 bits (77), Expect = 0.043 Identities = 22/82 (26%), Positives = 38/82 (46%), Gaps = 1/82 (1%) Frame = +2 Query: 263 RTPLHELALSIKLLRLGAIGHF-LSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPLGT 439 R L + L + L + I F +D ++ +L L ++ + LT LG Sbjct: 420 RCNLSSVILQLMALGIADIASFDFMDKPSADAIDGALKQLVILEALQEINGDYKLTSLGQ 479 Query: 440 ILAKLPIEPRLGKMMVLGFVLG 505 +A+ P+EPRL K+++ LG Sbjct: 480 KMAQFPLEPRLAKVILASETLG 501 >SB_27922| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1704 Score = 50.0 bits (114), Expect = 1e-06 Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 10/87 (11%) Frame = +2 Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDA------- 412 ++ R PL ++ L +KLL LGA LS +PP ++ + LL+++G L Sbjct: 331 ELQRCPLEQVVLQVKLLDLGAPKAILSLALQPPDIEDIERTVLLLKQVGALSTIMKGRRI 390 Query: 413 ---EDALTPLGTILAKLPIEPRLGKMM 484 + LT +G +L LP++ R+GK+M Sbjct: 391 DPYDGELTFIGKVLGTLPVDVRIGKLM 417 >SB_40812| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1168 Score = 46.4 bits (105), Expect = 2e-05 Identities = 20/71 (28%), Positives = 37/71 (52%) Frame = +3 Query: 9 ILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXXXX 188 +++TN+AETS+TI ++ YV+D+ K + + ++S+ W SK + Q Sbjct: 626 VVATNVAETSLTIPNIKYVVDTGMVKRRYYDKVTGVSSFRITWTSKASANQRAGRAGRVE 685 Query: 189 XXXCFTLCTYA 221 C+ L + A Sbjct: 686 PGHCYRLYSSA 696 Score = 46.0 bits (104), Expect = 2e-05 Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 8/85 (9%) Frame = +2 Query: 263 RTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDA------- 421 R P+ +L L +K + + + +F PP A+ AE LL +LG L+ Sbjct: 712 RCPVDDLVLQMKSMNIDKVVNF--PFPTPPSSSALETAEKLLLDLGALEERKTVKGNISA 769 Query: 422 -LTPLGTILAKLPIEPRLGKMMVLG 493 ++PLG+ +AK P+ PR KM+ LG Sbjct: 770 VISPLGSAMAKFPVLPRYAKMLCLG 794 >SB_54154| Best HMM Match : HA2 (HMM E-Value=3.5e-22) Length = 354 Score = 46.0 bits (104), Expect = 2e-05 Identities = 20/31 (64%), Positives = 27/31 (87%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKL 95 K++++TNIAETSITI+DVV+V+D K K KL Sbjct: 211 KIVIATNIAETSITIDDVVFVVDCGKVKEKL 241 Score = 44.8 bits (101), Expect = 5e-05 Identities = 20/47 (42%), Positives = 30/47 (63%) Frame = +2 Query: 377 EXLLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVETP 517 E L+ LD ++ LTPLG LA LP++PR+GKM++ G ++ P Sbjct: 261 ELCLQIKNALDTKENLTPLGYHLASLPVDPRIGKMILFGAIVSCLDP 307 >SB_23205| Best HMM Match : Helicase_C (HMM E-Value=3.9e-14) Length = 1197 Score = 45.6 bits (103), Expect = 3e-05 Identities = 23/75 (30%), Positives = 38/75 (50%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182 K +++TNIAETS+T++ +++VID+ K+K++ M + S+ N Q Sbjct: 807 KCVVATNIAETSLTVDGIMFVIDAGYCKLKVYNPKIGMDALQVYPISQANANQRSGRAGR 866 Query: 183 XXXXXCFTLCTYARY 227 CF L T Y Sbjct: 867 TGPGQCFRLYTENSY 881 Score = 31.9 bits (69), Expect = 0.40 Identities = 23/69 (33%), Positives = 36/69 (52%), Gaps = 3/69 (4%) Frame = +2 Query: 263 RTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPLG-- 436 RT L + L +K L + + F +PPP + ++ + L LG LD +LTPLG Sbjct: 895 RTNLANVVLLLKSLGVQNLLEF--HFMDPPPQENILNSMYQLWILGALDNTGSLTPLGRQ 952 Query: 437 -TILAKLPI 460 TI++ L + Sbjct: 953 MTIVSMLSV 961 >SB_37839| Best HMM Match : HA2 (HMM E-Value=4e-21) Length = 422 Score = 45.2 bits (102), Expect = 4e-05 Identities = 24/77 (31%), Positives = 40/77 (51%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182 K +++TNIAETS+TI+ VV+VID +K K++ + S S+ + +Q Sbjct: 156 KCVVATNIAETSLTIDGVVFVIDPGFSKQKVYNPRIRVESLLVSAISRASAQQRAGRAGR 215 Query: 183 XXXXXCFTLCTYARYEK 233 CF L T +++ Sbjct: 216 TRPGKCFRLYTEKAFQE 232 >SB_5773| Best HMM Match : HA2 (HMM E-Value=3e-16) Length = 2352 Score = 44.0 bits (99), Expect = 9e-05 Identities = 24/67 (35%), Positives = 39/67 (58%) Frame = +2 Query: 293 IKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPLGTILAKLPIEPRL 472 +KL+ LG F E P +++ A L +LG + + +LT LG L+K+P+EPRL Sbjct: 1058 VKLMDLGISDPFKFDYVEAPSKESINRAVASLVQLGAIK-DGSLTELGRKLSKVPLEPRL 1116 Query: 473 GKMMVLG 493 G+++ G Sbjct: 1117 GRLLFEG 1123 Score = 41.9 bits (94), Expect = 4e-04 Identities = 24/80 (30%), Positives = 37/80 (46%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182 KV+ STN AETSITI V +V+D+ AK + + S+++ +Q Sbjct: 963 KVVFSTNCAETSITIPGVKFVVDTGMAKEMKYEEKRGLNILEVSVISRSSADQRKGRAGR 1022 Query: 183 XXXXXCFTLCTYARYEKLEE 242 C+ L T Y +E+ Sbjct: 1023 TDSGKCYRLYTEKDYTAMEK 1042 >SB_47261| Best HMM Match : HA2 (HMM E-Value=5.8e-16) Length = 351 Score = 41.5 bits (93), Expect = 5e-04 Identities = 16/40 (40%), Positives = 29/40 (72%) Frame = +2 Query: 398 GCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLGVETP 517 G L ++A+TP+G +L++LP++ +GKM+++G V V P Sbjct: 122 GALTEDEAITPVGQMLSRLPVDVVIGKMLLMGSVFHVTDP 161 >SB_8770| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1303 Score = 40.3 bits (90), Expect = 0.001 Identities = 23/56 (41%), Positives = 30/56 (53%), Gaps = 4/56 (7%) Frame = +2 Query: 350 PPLD----AVIEAEXLLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLG 505 PPL +I A L L LD E LT LG +A+ P+EP+L KM++ LG Sbjct: 696 PPLSRRSSTMISAMEALHSLSALDNEGLLTRLGRRMAEFPLEPQLSKMLIQSVHLG 751 >SB_33763| Best HMM Match : RVT_1 (HMM E-Value=3.1e-17) Length = 271 Score = 37.9 bits (84), Expect = 0.006 Identities = 15/28 (53%), Positives = 22/28 (78%) Frame = +2 Query: 422 LTPLGTILAKLPIEPRLGKMMVLGFVLG 505 LT +G +L LP++ R+GK+MVLG+V G Sbjct: 234 LTFIGKVLGTLPVDVRIGKLMVLGYVFG 261 >SB_6014| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 36 Score = 34.7 bits (76), Expect = 0.057 Identities = 16/26 (61%), Positives = 21/26 (80%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVYVIDSCK 80 K I+STNIAETSITI+ + ++ DS K Sbjct: 11 KCIVSTNIAETSITIDGIRFIADSGK 36 >SB_12766| Best HMM Match : Helicase_C (HMM E-Value=5.8e-09) Length = 185 Score = 31.9 bits (69), Expect = 0.40 Identities = 13/20 (65%), Positives = 18/20 (90%) Frame = +3 Query: 3 KVILSTNIAETSITINDVVY 62 KVI++TN+AE SITI+ +VY Sbjct: 132 KVIVATNVAEASITIDGIVY 151 >SB_15794| Best HMM Match : DUF1605 (HMM E-Value=5.9e-12) Length = 655 Score = 30.7 bits (66), Expect = 0.93 Identities = 13/20 (65%), Positives = 16/20 (80%) Frame = +2 Query: 443 LAKLPIEPRLGKMMVLGFVL 502 LA LP+EPRLGKM++ VL Sbjct: 87 LADLPVEPRLGKMILYSVVL 106 >SB_41429| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 732 Score = 29.9 bits (64), Expect = 1.6 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = +1 Query: 349 PAAGRCHRGGGSAPRAGLSGRRGR 420 PA + RGGG+ PR G GR GR Sbjct: 252 PANSKPSRGGGNTPRGGGRGRGGR 275 >SB_56219| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 252 Score = 29.1 bits (62), Expect = 2.9 Identities = 13/39 (33%), Positives = 23/39 (58%) Frame = +2 Query: 272 LHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLL 388 LHE++L +K+ + H +S EPP + ++I +E L Sbjct: 24 LHEISLEMKVSHTANVLHGVSDTAEPPEIISLIRSEGSL 62 >SB_50927| Best HMM Match : DEAD (HMM E-Value=3.2e-06) Length = 368 Score = 27.9 bits (59), Expect = 6.6 Identities = 15/45 (33%), Positives = 17/45 (37%) Frame = +3 Query: 96 FTSHNNMTSYATVWASKTNLEQXXXXXXXXXXXXCFTLCTYARYE 230 + S M S VW S+ N Q CF L T RYE Sbjct: 314 YDSTKGMESLEEVWFSRANARQRRGRAGRVTSGVCFHLFTRNRYE 358 >SB_9655| Best HMM Match : VWA (HMM E-Value=0.00019) Length = 283 Score = 27.9 bits (59), Expect = 6.6 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%) Frame = +1 Query: 265 DSATRACFEHKAPPPGCDRSLPVEXXGAPAAGRCHRGGGSAPRAGLSGRR-GRAHATRDH 441 D + CF+ P C +S PVE + R G R ++GRR HA Sbjct: 65 DGPSDKCFQQLIKPYTCVKSDPVETFTSTVDTPRGRDGQGVARPVVTGRRVASEHAPTPP 124 Query: 442 PR 447 PR Sbjct: 125 PR 126 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,668,934 Number of Sequences: 59808 Number of extensions: 327132 Number of successful extensions: 1041 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 906 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1039 length of database: 16,821,457 effective HSP length: 79 effective length of database: 12,096,625 effective search space used: 1439498375 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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