Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0340
         (597 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcript...    24   4.3  
AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative different...    23   5.7  
AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein ...    23   7.5  

>AB090816-2|BAC57908.1| 1201|Anopheles gambiae reverse transcriptase
           protein.
          Length = 1201

 Score = 23.8 bits (49), Expect = 4.3
 Identities = 13/47 (27%), Positives = 24/47 (51%), Gaps = 2/47 (4%)
 Frame = -1

Query: 597 GASNSLLRLSSHEYFRERCRISRH-RGQGVSTPSTK-PNTIILPRRG 463
           G  N+ ++++  EY  E CR+ +    +G   P  K    ++LP+ G
Sbjct: 510 GIPNAAVKVAIEEYTEEFCRLYQDCLSRGTFPPQWKRQRLVLLPKPG 556


>AJ439398-8|CAD28131.1| 1283|Anopheles gambiae putative
           differentiation regulator protein.
          Length = 1283

 Score = 23.4 bits (48), Expect = 5.7
 Identities = 17/53 (32%), Positives = 19/53 (35%)
 Frame = +1

Query: 328 PVEXXGAPAAGRCHRGGGSAPRAGLSGRRGRAHATRDHPRQAADRTSPRQNDG 486
           P    G    G    GGGS+   G  G  G     RDH     DR   R+  G
Sbjct: 200 PGAGGGGSGGGAPGGGGGSSGGPGPGGGGGGGGRDRDH----RDRDREREGGG 248


>AF002238-1|AAB97731.1|  327|Anopheles gambiae ribosomal protein L5
           protein.
          Length = 327

 Score = 23.0 bits (47), Expect = 7.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 411 PRTRSRHSGPSSPSCR 458
           PR RS  SG   PSCR
Sbjct: 257 PRRRSPRSGGRWPSCR 272


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 573,727
Number of Sequences: 2352
Number of extensions: 10065
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 563,979
effective HSP length: 61
effective length of database: 420,507
effective search space used: 57609459
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)