Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0340
(597 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g01130.1 68415.m00021 helicase domain-containing protein simi... 89 3e-18
At1g48650.1 68414.m05445 helicase domain-containing protein cont... 82 3e-16
At1g58060.1 68414.m06580 helicase domain-containing protein cont... 81 4e-16
At1g58050.1 68414.m06579 helicase domain-containing protein cont... 81 4e-16
At2g35920.1 68415.m04409 helicase domain-containing protein simi... 79 2e-15
At5g04895.1 68418.m00514 helicase domain-containing protein simi... 72 3e-13
At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to ... 64 7e-11
At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative sim... 63 1e-10
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 60 1e-09
At1g33390.1 68414.m04133 helicase domain-containing protein simi... 53 1e-07
At4g18465.1 68417.m02740 RNA helicase, putative similar to SP|Q1... 52 3e-07
At2g35340.1 68415.m04333 RNA helicase, putative similar to ATP-d... 51 5e-07
At1g32490.1 68414.m04009 RNA helicase, putative similar to ATP-d... 51 5e-07
At3g62310.1 68416.m07000 RNA helicase, putative similar to SP|P5... 50 2e-06
At2g47250.1 68415.m05900 RNA helicase, putative similar to SP|P5... 50 2e-06
At1g27900.1 68414.m03419 RNA helicase, putative similar to SP|Q1... 49 2e-06
At1g26370.1 68414.m03217 RNA helicase, putative similar to SP|Q1... 49 2e-06
At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-... 48 6e-06
At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative si... 47 1e-05
At4g16680.1 68417.m02519 RNA helicase, putative similar to SP|Q1... 46 2e-05
At4g01020.1 68417.m00137 helicase domain-containing protein / IB... 42 2e-04
At5g10370.1 68418.m01203 helicase domain-containing protein / IB... 41 5e-04
At3g24740.1 68416.m03106 expressed protein 29 1.8
At1g18870.1 68414.m02349 isochorismate synthase, putative / isoc... 29 2.4
At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) / isoch... 29 3.1
At1g74710.1 68414.m08654 isochorismate synthase 1 (ICS1) / isoch... 29 3.1
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 27 9.5
At3g47060.1 68416.m05110 FtsH protease, putative contains simila... 27 9.5
>At2g01130.1 68415.m00021 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 1112
Score = 88.6 bits (210), Expect = 3e-18
Identities = 44/88 (50%), Positives = 58/88 (65%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ RTPLH L L IK L LG+I FLS + P L AV +A L+ +G LD + LT L
Sbjct: 640 EILRTPLHSLCLQIKSLNLGSISEFLSRALQSPELLAVQKAIAFLKIIGALDENEDLTTL 699
Query: 434 GTILAKLPIEPRLGKMMVLGFVLGVETP 517
G L+KLP+EP+LGKM++LG +LG P
Sbjct: 700 GRYLSKLPMEPKLGKMLILGAILGCLDP 727
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++L+TNIAETSITINDV +VID KAK + + NN W SK + +Q
Sbjct: 556 KIVLATNIAETSITINDVAFVIDCGKAKETSYDALNNTPCLLPSWISKVSAQQRRGRAGR 615
Query: 183 XXXXXCFTLCTYARYEKLEEH 245
C+ L Y+ E+
Sbjct: 616 VRPGQCYHLYPKCVYDAFAEY 636
>At1g48650.1 68414.m05445 helicase domain-containing protein
contains similarity to DEIH-box RNA/DNA helicase
[Arabidopsis thaliana] GI:5881579; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00035:
Double-stranded RNA binding motif
Length = 1197
Score = 81.8 bits (193), Expect = 3e-16
Identities = 40/88 (45%), Positives = 55/88 (62%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ RTPL L L IK L LG+I FLS +PP +V A L+ +G LD ++ LTPL
Sbjct: 721 ELLRTPLQSLCLQIKSLGLGSISEFLSRALQPPEALSVQNAVEYLKIIGALDDDENLTPL 780
Query: 434 GTILAKLPIEPRLGKMMVLGFVLGVETP 517
G L+ LP+EP+LGKM++LG + P
Sbjct: 781 GKNLSMLPVEPKLGKMLILGAIFNCLDP 808
Score = 59.7 bits (138), Expect = 1e-09
Identities = 32/81 (39%), Positives = 41/81 (50%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++L+TN+AETSITINDVVYVID KAK + + NN W SK Q
Sbjct: 637 KIVLATNMAETSITINDVVYVIDCGKAKETSYDALNNTPCLLPSWISKAAARQRRGRAGR 696
Query: 183 XXXXXCFTLCTYARYEKLEEH 245
C+ L YE ++
Sbjct: 697 VMPGECYHLYPRCVYEAFADY 717
>At1g58060.1 68414.m06580 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1459
Score = 81.4 bits (192), Expect = 4e-16
Identities = 42/88 (47%), Positives = 56/88 (63%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
+M R PL EL L IKLL LG I FLS EPP A+ A LL E+G ++ ++ LTPL
Sbjct: 1059 EMLRMPLVELCLQIKLLGLGHIKPFLSRALEPPSEGAMTSAISLLHEVGAVEGDEELTPL 1118
Query: 434 GTILAKLPIEPRLGKMMVLGFVLGVETP 517
G LAKLP++ +GKM++ G + G +P
Sbjct: 1119 GHHLAKLPVDVLIGKMLLYGGIFGCLSP 1146
Score = 67.7 bits (158), Expect = 6e-12
Identities = 36/78 (46%), Positives = 44/78 (56%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVI +TNIAETSITI+DVVYVIDS K K + ++S W S+ N Q
Sbjct: 974 KVIAATNIAETSITIDDVVYVIDSGKHKENRYNPQKKLSSMVEDWISQANARQRTGRAGR 1033
Query: 183 XXXXXCFTLCTYARYEKL 236
CF+L T R+EKL
Sbjct: 1034 VKPGICFSLYTRYRFEKL 1051
>At1g58050.1 68414.m06579 helicase domain-containing protein contains
similarity to SP|P24785 Dosage compensation regulator
(Male-less protein) (No action potential protein)
{Drosophila melanogaster}; contains Pfam profiles
PF04408: Helicase associated domain (HA2), PF00271:
Helicase conserved C-terminal domain
Length = 1417
Score = 81.4 bits (192), Expect = 4e-16
Identities = 42/88 (47%), Positives = 56/88 (63%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
+M R PL EL L IKLL LG I FLS EPP A+ A LL ++G L+ ++ LTPL
Sbjct: 1026 EMLRVPLVELCLHIKLLGLGQIKPFLSKALEPPSESAINSAILLLHKVGALEGDEELTPL 1085
Query: 434 GTILAKLPIEPRLGKMMVLGFVLGVETP 517
G LAKLP++ +GKM++ G + G +P
Sbjct: 1086 GHHLAKLPVDLLIGKMLLYGGIFGCLSP 1113
Score = 73.7 bits (173), Expect = 8e-14
Identities = 38/78 (48%), Positives = 45/78 (57%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVI++TNIAETSITI DVVYVIDS K K + H ++S W SK N Q
Sbjct: 941 KVIIATNIAETSITIEDVVYVIDSGKHKENRYNPHKKLSSMVEDWVSKANARQRMGRAGR 1000
Query: 183 XXXXXCFTLCTYARYEKL 236
CF+L T R+EKL
Sbjct: 1001 VKPGHCFSLYTRHRFEKL 1018
>At2g35920.1 68415.m04409 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579; contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain
Length = 995
Score = 79.4 bits (187), Expect = 2e-15
Identities = 38/88 (43%), Positives = 56/88 (63%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ RTPL EL L IK L++G+IG FL+ +PP AV A LL+ +G L+ + LTPL
Sbjct: 646 EIIRTPLQELCLHIKSLQVGSIGSFLAKALQPPDALAVENAIELLKTIGALNDVEELTPL 705
Query: 434 GTILAKLPIEPRLGKMMVLGFVLGVETP 517
G L LP++P +GKM+++G + P
Sbjct: 706 GRHLCTLPVDPNIGKMLLIGAIFQCVNP 733
Score = 56.0 bits (129), Expect = 2e-08
Identities = 28/81 (34%), Positives = 42/81 (51%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++L+TNIAE+SITI+DVVYV+D KAK + + N + W SK + Q
Sbjct: 562 KIVLATNIAESSITIDDVVYVVDCGKAKETSYDALNKVACLLPSWISKASAHQRRGRAGR 621
Query: 183 XXXXXCFTLCTYARYEKLEEH 245
C+ L Y+ ++
Sbjct: 622 VQAGVCYRLYPKVIYDAFPQY 642
>At5g04895.1 68418.m00514 helicase domain-containing protein similar
to DEIH-box RNA/DNA helicase [Arabidopsis thaliana]
GI:5881579;contains Pfam profiles PF04408: Helicase
associated domain (HA2), PF00271: Helicase conserved
C-terminal domain, PF00035: Double-stranded RNA binding
motif
Length = 581
Score = 72.1 bits (169), Expect = 3e-13
Identities = 34/82 (41%), Positives = 54/82 (65%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ RTPL+ L L IK L++ +I FLS + P AV A L+ +G LD ++ LT L
Sbjct: 103 ELLRTPLNSLCLQIKSLQVESIAEFLSAALQAPESLAVQNAIGFLKMIGALDEKENLTDL 162
Query: 434 GTILAKLPIEPRLGKMMVLGFV 499
G +L+ LP++P+LGKM+++G +
Sbjct: 163 GKLLSILPVDPKLGKMLIMGAI 184
Score = 55.6 bits (128), Expect = 2e-08
Identities = 28/81 (34%), Positives = 41/81 (50%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++L+TN+AE SITINDVV+V+D KAK + + NN W S+ + Q
Sbjct: 19 KIVLATNMAEASITINDVVFVVDCGKAKETTYDALNNTPCLLPSWISQASARQRRGRAGR 78
Query: 183 XXXXXCFTLCTYARYEKLEEH 245
C+ L Y+ E+
Sbjct: 79 LFPGECYHLYPKCVYDAFAEY 99
>At1g06670.1 68414.m00707 DEIH-box RNA/DNA helicase identical to
DEIH-box RNA/DNA helicase GB:BAA84364 GI:5881579
[Arabidopsis thaliana]
Length = 1576
Score = 64.1 bits (149), Expect = 7e-11
Identities = 30/81 (37%), Positives = 49/81 (60%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++L+TNIAE+++TI+DVVYVIDS + K K + +N++++ + W SK N +Q
Sbjct: 634 KIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNDVSTLQSSWVSKANAKQRAGRAGR 693
Query: 183 XXXXXCFTLCTYARYEKLEEH 245
C+ L + R L E+
Sbjct: 694 CQAGICYHLYSKLRAASLPEY 714
Score = 56.8 bits (131), Expect = 1e-08
Identities = 27/89 (30%), Positives = 47/89 (52%), Gaps = 1/89 (1%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGA-IGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTP 430
++ R P+ EL L +K+L + FL +PP ++ A +L+++G L E+ LT
Sbjct: 718 EVMRMPVDELCLQVKMLDPNCNVNDFLQKLMDPPVAQSIENALIILKDIGALTPEEELTE 777
Query: 431 LGTILAKLPIEPRLGKMMVLGFVLGVETP 517
LG +LP+ PR+ KM+ ++ P
Sbjct: 778 LGQKFGQLPVHPRISKMIYFAILVNCLDP 806
>At2g30800.1 68415.m03755 DEIH-box RNA/DNA helicase, putative
similar to DEIH-box RNA/DNA helicase [Arabidopsis
thaliana] GI:5881579; contains Pfam profiles PF04408:
Helicase associated domain (HA2), PF00271: Helicase
conserved C-terminal domain
Length = 1299
Score = 63.3 bits (147), Expect = 1e-10
Identities = 29/74 (39%), Positives = 46/74 (62%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K++L+TNIAE+++TI+DVVYVIDS + K K + +NN+++ + W SK N +Q
Sbjct: 610 KIVLATNIAESAVTIDDVVYVIDSGRMKEKSYDPYNNVSTLQSSWVSKANAKQRQGRAGR 669
Query: 183 XXXXXCFTLCTYAR 224
C+ L + R
Sbjct: 670 CQPGICYHLYSRLR 683
Score = 48.8 bits (111), Expect = 3e-06
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Frame = +2
Query: 263 RTPLHELALSIKLLRLGA-IGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPLGT 439
R P+ EL L +K+L FL +PP ++ A +L+++G L ++ LT LG
Sbjct: 697 RMPVEELCLQVKILDPNCKTNDFLQKLLDPPVDQSIANALSILQDIGALTPQEELTELGE 756
Query: 440 ILAKLPIEPRLGKMMVLGFVLGVETP 517
LP+ P + KM+ ++ P
Sbjct: 757 KFGHLPVHPLISKMLFFAVLVNCLDP 782
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 59.7 bits (138), Expect = 1e-09
Identities = 31/81 (38%), Positives = 42/81 (51%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVIL+TNIAE+S+TI V YVIDSC++ + + VW S++ EQ
Sbjct: 323 KVILATNIAESSVTIPKVAYVIDSCRSLQVFWDPSRKRDAVQLVWVSRSQAEQRRGRTGR 382
Query: 183 XXXXXCFTLCTYARYEKLEEH 245
+ L A + KLEEH
Sbjct: 383 TCDGEVYRLVPSAFFNKLEEH 403
>At1g33390.1 68414.m04133 helicase domain-containing protein similar
to kurz protein [Drosophila melanogaster] GI:5869803;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1237
Score = 53.2 bits (122), Expect = 1e-07
Identities = 25/79 (31%), Positives = 42/79 (53%)
Frame = +3
Query: 6 VILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXXX 185
V+++TN+AETS+TI + YV+D+ + K+K + S M SY W S+ + Q
Sbjct: 675 VVVATNVAETSLTIPGIKYVVDTGRVKVKNYDSKTGMESYEVDWISQASASQRAGRAGRT 734
Query: 186 XXXXCFTLCTYARYEKLEE 242
C+ L + A + + E
Sbjct: 735 GPGHCYRLYSSAVFSNIFE 753
Score = 45.6 bits (103), Expect = 3e-05
Identities = 23/78 (29%), Positives = 42/78 (53%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPL 433
++ + P+ + L +K + + + +F PP A+ EAE L+ L LD+ LTPL
Sbjct: 759 EIMKVPVDGVILLMKSMNIPKVENF--PFPTPPEPSAIREAERCLKALEALDSNGGLTPL 816
Query: 434 GTILAKLPIEPRLGKMMV 487
G ++ P+ PR +M++
Sbjct: 817 GKAMSHYPMSPRHSRMLL 834
>At4g18465.1 68417.m02740 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 704
Score = 52.0 bits (119), Expect = 3e-07
Identities = 29/71 (40%), Positives = 38/71 (53%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVILSTNIAETS+T+ VVYVIDS +K K + +++ S SK + Q
Sbjct: 345 KVILSTNIAETSLTLEGVVYVIDSGFSKQKFYNPISDIESLVVAPISKASARQRSGRAGR 404
Query: 183 XXXXXCFTLCT 215
C+ L T
Sbjct: 405 VRPGKCYRLYT 415
Score = 39.5 bits (88), Expect = 0.002
Identities = 28/85 (32%), Positives = 44/85 (51%), Gaps = 1/85 (1%)
Frame = +2
Query: 254 QMFRTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALT-P 430
+M R+ L + +K L + I F PP +A+I A +L L LD + LT P
Sbjct: 430 EMQRSNLVSTVIQLKALGIDNILGF--DWPAPPSSEAMIRALEVLYSLQILDDDAKLTSP 487
Query: 431 LGTILAKLPIEPRLGKMMVLGFVLG 505
G +A+LP++P + KM++ LG
Sbjct: 488 TGFQVAELPLDPMISKMILASSELG 512
>At2g35340.1 68415.m04333 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1110
Score = 51.2 bits (117), Expect = 5e-07
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+L+TNIAETS+TI+ + YV+D +KMK + M S SK + Q
Sbjct: 739 KVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLVTPISKASATQRTGRAGR 798
Query: 183 XXXXXCFTLCT-YARYEKLEEH 245
C+ L T + Y LE++
Sbjct: 799 TSPGKCYRLYTAFNYYNDLEDN 820
>At1g32490.1 68414.m04009 RNA helicase, putative similar to
ATP-dependent RNA helicase #3 [Homo sapiens] GI:3107913;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1044
Score = 51.2 bits (117), Expect = 5e-07
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 1/82 (1%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+L+TNIAETS+TI+ + YV+D +KMK + M S SK + Q
Sbjct: 673 KVVLATNIAETSLTIDGIKYVVDPGFSKMKSYNPRTGMESLLITPISKASATQRAGRAGR 732
Query: 183 XXXXXCFTLCTYARYEK-LEEH 245
C+ L T Y LEE+
Sbjct: 733 TSPGKCYRLYTAFNYNNDLEEN 754
>At3g62310.1 68416.m07000 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 726
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 37/71 (52%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K+++STNIAETS+TI+ +VYVID AK K++ + S SK + Q
Sbjct: 343 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGR 402
Query: 183 XXXXXCFTLCT 215
CF L T
Sbjct: 403 TRPGKCFRLYT 413
>At2g47250.1 68415.m05900 RNA helicase, putative similar to
SP|P53131 Pre-mRNA splicing factor RNA helicase PRP43
(Helicase JA1) {Saccharomyces cerevisiae}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 729
Score = 49.6 bits (113), Expect = 2e-06
Identities = 27/71 (38%), Positives = 37/71 (52%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K+++STNIAETS+TI+ +VYVID AK K++ + S SK + Q
Sbjct: 347 KIVVSTNIAETSLTIDGIVYVIDPGFAKQKVYNPRIRVESLLVSPISKASAHQRSGRAGR 406
Query: 183 XXXXXCFTLCT 215
CF L T
Sbjct: 407 TRPGKCFRLYT 417
>At1g27900.1 68414.m03419 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 700
Score = 49.2 bits (112), Expect = 2e-06
Identities = 27/75 (36%), Positives = 37/75 (49%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
+ I+STNIAETS+T++ VVYVIDS K + + + M S + SK Q
Sbjct: 275 RFIVSTNIAETSLTVDGVVYVIDSGYVKQRQYNPSSGMFSLDVIQISKVQANQRAGRAGR 334
Query: 183 XXXXXCFTLCTYARY 227
C+ L A Y
Sbjct: 335 TRPGKCYRLYPLAVY 349
>At1g26370.1 68414.m03217 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 717
Score = 49.2 bits (112), Expect = 2e-06
Identities = 32/80 (40%), Positives = 38/80 (47%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVIL+TNIAETSITI + YVID K + + M S V ASK Q
Sbjct: 352 KVILATNIAETSITIPGIRYVIDPGFVKARSYDPSKGMESLDVVPASKAQTLQRSGRAGR 411
Query: 183 XXXXXCFTLCTYARYEKLEE 242
F L +EKLE+
Sbjct: 412 EGPGKSFRLYPEREFEKLED 431
Score = 33.9 bits (74), Expect = 0.083
Identities = 24/77 (31%), Positives = 38/77 (49%), Gaps = 1/77 (1%)
Frame = +2
Query: 263 RTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDAL-TPLGT 439
R L + L +K L + I F + P A+I+A L LG L + L P+G
Sbjct: 439 RCNLSNIILQLKALGIDDIVGF--DFIDKPSRGAIIKALAELHSLGALADDGKLENPVGY 496
Query: 440 ILAKLPIEPRLGKMMVL 490
+++LP+EP K ++L
Sbjct: 497 QMSRLPLEPVYSKALIL 513
>At5g13010.1 68418.m01491 RNA helicase, putative similar to DEAH-box
RNA helicase [Chlamydomonas reinhardtii] GI:12044832;
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain
Length = 1226
Score = 47.6 bits (108), Expect = 6e-06
Identities = 25/75 (33%), Positives = 38/75 (50%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
K I++TNIAETS+T++ + YVID+ KMK+F M + S+ +Q
Sbjct: 802 KCIVATNIAETSLTVDGIYYVIDTGYGKMKVFNPRMGMDALQVFPISRAASDQRAGRAGR 861
Query: 183 XXXXXCFTLCTYARY 227
C+ L T + Y
Sbjct: 862 TGPGTCYRLYTESAY 876
>At3g26560.1 68416.m03315 ATP-dependent RNA helicase, putative similar
to SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, PF00575:
S1 RNA binding domain
Length = 1168
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/54 (44%), Positives = 31/54 (57%)
Frame = +2
Query: 344 EPPPLDAVIEAEXLLRELGCLDAEDALTPLGTILAKLPIEPRLGKMMVLGFVLG 505
+PP A+I A L LG LD E LT LG +A+ P+EP L KM++ LG
Sbjct: 897 DPPQPQALISAMEQLYSLGALDEEGLLTKLGRKMAEFPLEPPLSKMLLASVDLG 950
Score = 44.0 bits (99), Expect = 8e-05
Identities = 22/75 (29%), Positives = 37/75 (49%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+++TNIAE S+TI+ + YV+D AK ++ + S S+ + +Q
Sbjct: 784 KVVVATNIAEASLTIDGIYYVVDPGFAKQNVYNPKQGLESLVITPISQASAKQRAGRAGR 843
Query: 183 XXXXXCFTLCTYARY 227
C+ L T + Y
Sbjct: 844 TGPGKCYRLYTESAY 858
>At4g16680.1 68417.m02519 RNA helicase, putative similar to
SP|Q14562 ATP-dependent helicase DDX8 (RNA helicase
HRH1) (DEAH-box protein 8) {Homo sapiens}; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain
Length = 883
Score = 46.0 bits (104), Expect = 2e-05
Identities = 26/69 (37%), Positives = 33/69 (47%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KV+L+TNIAETS+TI+ V YVID K+ + M S SK + Q
Sbjct: 491 KVVLATNIAETSLTIDGVKYVIDPGYCKINSYNPRTGMESLLVTPISKASAAQRAGRSGR 550
Query: 183 XXXXXCFTL 209
CF L
Sbjct: 551 TGPGKCFRL 559
Score = 46.0 bits (104), Expect = 2e-05
Identities = 25/75 (33%), Positives = 43/75 (57%)
Frame = +2
Query: 263 RTPLHELALSIKLLRLGAIGHFLSXXXEPPPLDAVIEAEXLLRELGCLDAEDALTPLGTI 442
R L + L++K L + + +F +PPP +A+++A LL LG LD +T +G
Sbjct: 575 RANLASVVLTLKSLGIQDVFNF--DFMDPPPENALLKALELLYALGALDEIGEITKVGER 632
Query: 443 LAKLPIEPRLGKMMV 487
+ + P++P L KM+V
Sbjct: 633 MVEFPVDPMLSKMIV 647
>At4g01020.1 68417.m00137 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to SP|Q14562 ATP-dependent helicase DDX8 (RNA
helicase HRH1) (DEAH-box protein 8) {Homo sapiens};
contains Pfam profiles PF04408: Helicase associated
domain (HA2), PF00271: Helicase conserved C-terminal
domain, PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1787
Score = 42.3 bits (95), Expect = 2e-04
Identities = 24/78 (30%), Positives = 36/78 (46%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVI +TNIAETS+TI V YVIDS K + M+ S+++ Q
Sbjct: 572 KVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCQVSQSSARQRAGRAGR 631
Query: 183 XXXXXCFTLCTYARYEKL 236
C+ L + ++ +
Sbjct: 632 TEPGRCYRLYSKTDFDSM 649
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/78 (29%), Positives = 42/78 (53%), Gaps = 6/78 (7%)
Frame = +2
Query: 272 LHELALSIKLLRLGAIG--HFLSXXXEPPPL-DAVIEAEXLLRELGCLDAEDA---LTPL 433
+ + L + LLR+ A+G + + P+ +A+ A L +LG + ++ LT
Sbjct: 657 IRRVHLGVALLRMLALGIDNIAAFEFVDAPVPEAIAMAIQNLVQLGAVVEKNGVLELTQE 716
Query: 434 GTILAKLPIEPRLGKMMV 487
G L KL +EP+LGK+++
Sbjct: 717 GHCLVKLGLEPKLGKLIL 734
>At5g10370.1 68418.m01203 helicase domain-containing protein / IBR
domain-containing protein / zinc finger protein-related
similar to RNA-dependent ATPase/helicase Cdc28p
[Schizosaccharomyces pombe] GI:1439562; contains Pfam
profiles PF04408: Helicase associated domain (HA2),
PF00271: Helicase conserved C-terminal domain, weak hit
to PF00097: Zinc finger, C3HC4 type (RING finger),
PF01485: IBR domain
Length = 1775
Score = 41.1 bits (92), Expect = 5e-04
Identities = 24/69 (34%), Positives = 32/69 (46%)
Frame = +3
Query: 3 KVILSTNIAETSITINDVVYVIDSCKAKMKLFTSHNNMTSYATVWASKTNLEQXXXXXXX 182
KVI +TNIAETS+TI V YVIDS K + M+ S+++ Q
Sbjct: 575 KVIFATNIAETSLTIPGVKYVIDSGMVKESKYEPRTGMSILKVCRVSQSSARQRAGRAGR 634
Query: 183 XXXXXCFTL 209
C+ L
Sbjct: 635 TEPGRCYRL 643
Score = 29.1 bits (62), Expect = 2.4
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 6/78 (7%)
Frame = +2
Query: 272 LHELALSIKLLRLGAIG--HFLSXXXEPPPL-DAVIEAEXLLRELGCLDAEDA---LTPL 433
+ + L + LLR+ A+G + P+ +A+ A L +LG + ++ LT
Sbjct: 660 IRRVHLGVALLRMLALGVNNIAEFNFVDAPVPEAIAMAVQNLVQLGAVVEKNGVHELTQE 719
Query: 434 GTILAKLPIEPRLGKMMV 487
G L KL +EP+LGK+++
Sbjct: 720 GHCLVKLGLEPKLGKLIL 737
>At3g24740.1 68416.m03106 expressed protein
Length = 354
Score = 29.5 bits (63), Expect = 1.8
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = +1
Query: 358 GRCHRGGGSAPRAGLSGRRGRAHATRDHPRQAADR 462
G GG SA +G R R+ A R+H R ++DR
Sbjct: 266 GSLDNGGSSASGSGGGSRSHRSRAWRNHRRSSSDR 300
>At1g18870.1 68414.m02349 isochorismate synthase, putative /
isochorismate mutase, putative similar to GI:17223087
Length = 512
Score = 29.1 bits (62), Expect = 2.4
Identities = 14/35 (40%), Positives = 23/35 (65%)
Frame = -3
Query: 145 LLAHTVAYDVMLLWDVNSFIFALHESMTYTTSLMV 41
+LA TVA+D L W + + I AL E+M +S+++
Sbjct: 184 MLAATVAWDNELSWTLENAIEALQETMLQVSSVIM 218
>At1g74710.2 68414.m08655 isochorismate synthase 1 (ICS1) /
isochorismate mutase identical to GI:17223087 and
GB:AF078080; contains Pfam profile PF00425: chorismate
binding enzyme; contains TIGRfam profile TIGR00543:
isochorismate synthases; identical to cDNA isochorismate
synthase 1 precursor (ICS1) nuclear gene for plastid
product GI:17223086
Length = 622
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 145 LLAHTVAYDVMLLWDVNSFIFALHESMTYTTSLMV 41
+LA T+A+D L W + + I AL E+M +S+++
Sbjct: 239 MLAATIAWDDELSWTLENAIEALQETMLQVSSVVM 273
>At1g74710.1 68414.m08654 isochorismate synthase 1 (ICS1) /
isochorismate mutase identical to GI:17223087 and
GB:AF078080; contains Pfam profile PF00425: chorismate
binding enzyme; contains TIGRfam profile TIGR00543:
isochorismate synthases; identical to cDNA isochorismate
synthase 1 precursor (ICS1) nuclear gene for plastid
product GI:17223086
Length = 569
Score = 28.7 bits (61), Expect = 3.1
Identities = 13/35 (37%), Positives = 23/35 (65%)
Frame = -3
Query: 145 LLAHTVAYDVMLLWDVNSFIFALHESMTYTTSLMV 41
+LA T+A+D L W + + I AL E+M +S+++
Sbjct: 239 MLAATIAWDDELSWTLENAIEALQETMLQVSSVVM 273
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 27.1 bits (57), Expect = 9.5
Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%)
Frame = +1
Query: 301 PPPGCDRSLPVEXXGAPAAGRCHRGGGSA--PRAGLSGRRGRAHATR 435
PP D++ E AP+AG GGG A P G G GR +R
Sbjct: 239 PPGSYDKARSFERDIAPSAGSDRYGGGRAGGPIRG-GGEEGRGFRSR 284
>At3g47060.1 68416.m05110 FtsH protease, putative contains
similarity to FtsH protease GI:13183728 from [Medicago
sativa]
Length = 802
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -1
Query: 594 ASNSLLRLSSHEYFRERCRISRHR-GQGVSTPSTKP 490
+SNSLL + +F +RCR+ R + VS T P
Sbjct: 20 SSNSLLYSKASRFFNDRCRVYRQNPNRFVSNSITLP 55
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,069,988
Number of Sequences: 28952
Number of extensions: 221057
Number of successful extensions: 637
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 637
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1190791976
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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