Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0339
         (648 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q1NS64 Cluster: Putative RNA methylase:THUMP; n=2; delt...    34   2.6  
UniRef50_Q4DP88 Cluster: Putative uncharacterized protein; n=2; ...    34   2.6  
UniRef50_Q13SS4 Cluster: Putative uncharacterized protein; n=1; ...    34   3.4  
UniRef50_A1AUE5 Cluster: Diguanylate cyclase; n=1; Pelobacter pr...    34   3.4  
UniRef50_Q17B04 Cluster: Putative uncharacterized protein; n=1; ...    33   7.9  
UniRef50_Q5XHF3 Cluster: Phosphatase and actin regulator 4-B; n=...    33   7.9  

>UniRef50_Q1NS64 Cluster: Putative RNA methylase:THUMP; n=2; delta
           proteobacterium MLMS-1|Rep: Putative RNA methylase:THUMP
           - delta proteobacterium MLMS-1
          Length = 382

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 22/51 (43%), Positives = 28/51 (54%), Gaps = 1/51 (1%)
 Frame = +2

Query: 179 RRNLCLLCSIDSGASFQCPEQPIARMNNKPLDILNKPLGI-LGDKPVSGAL 328
           RRNL LL   D      CP Q +A + NK + + N P G+ LGDK  + AL
Sbjct: 278 RRNLALLPHGDRVTLKVCPLQELAPL-NKAVIVANPPYGVRLGDKAAAAAL 327


>UniRef50_Q4DP88 Cluster: Putative uncharacterized protein; n=2;
           Trypanosoma cruzi|Rep: Putative uncharacterized protein
           - Trypanosoma cruzi
          Length = 654

 Score = 34.3 bits (75), Expect = 2.6
 Identities = 18/62 (29%), Positives = 28/62 (45%), Gaps = 2/62 (3%)
 Frame = -2

Query: 311 VCLRGCPKVYSVYPAACYSYGQWAAQDIGKKPRSQWSRVNKGYADNHQQYLLCE--RHDV 138
           +CL   P+++       Y YG   A ++   P S  ++ N+ Y     QYL+ E   HD 
Sbjct: 563 ICLPTVPRIFPALSLLRYGYGGVVASELRGNPYSCDTKANRSYCYTGDQYLVMEGFAHDS 622

Query: 137 QG 132
            G
Sbjct: 623 WG 624


>UniRef50_Q13SS4 Cluster: Putative uncharacterized protein; n=1;
           Burkholderia xenovorans LB400|Rep: Putative
           uncharacterized protein - Burkholderia xenovorans
           (strain LB400)
          Length = 231

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 25/69 (36%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = -1

Query: 348 VLRPKVFRAPLTGLSPR----MPKGLFSISSGLLFIRAMGCSGHWKEAPESMEQSKQRLR 181
           +LR     +PL  LSP+      KG  S+ + L  I   G + + KEA + +  S++ LR
Sbjct: 77  MLRRVPLSSPLGALSPKERDGFKKGKESLLAELDAIVESGAASNAKEAADQLRVSEKYLR 136

Query: 180 R*SPTISAV 154
           R +PT SAV
Sbjct: 137 RLAPTQSAV 145


>UniRef50_A1AUE5 Cluster: Diguanylate cyclase; n=1; Pelobacter
           propionicus DSM 2379|Rep: Diguanylate cyclase -
           Pelobacter propionicus (strain DSM 2379)
          Length = 505

 Score = 33.9 bits (74), Expect = 3.4
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 152 HTADIVGD-YRRNLCLLCSIDSGASFQCPEQPIARMNNKPLDILNKPLGILGDKPVSGAL 328
           H  D V D YR+   +LC  D  ASF C  Q   ++  +   IL +  G+LG K V   +
Sbjct: 206 HATDAVPDQYRQQHDILCVADCLASFHCGTQDADKI-RRGRHILYETFGLLG-KEVEALI 263

Query: 329 NTLGLRT 349
             +G R+
Sbjct: 264 EAVGTRS 270


>UniRef50_Q17B04 Cluster: Putative uncharacterized protein; n=1;
           Aedes aegypti|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 239

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 21/46 (45%), Positives = 25/46 (54%)
 Frame = -1

Query: 423 NPRSSSEPLALVRPGISPA*SADWPVLRPKVFRAPLTGLSPRMPKG 286
           +PR   +PL    PG  P    D P  RP   R+PL+ LSPRMP G
Sbjct: 25  SPRGPGKPLGPTGPG-GPWGPVDPP--RPVKPRSPLSPLSPRMPCG 67


>UniRef50_Q5XHF3 Cluster: Phosphatase and actin regulator 4-B; n=3;
           Xenopus|Rep: Phosphatase and actin regulator 4-B -
           Xenopus laevis (African clawed frog)
          Length = 697

 Score = 32.7 bits (71), Expect = 7.9
 Identities = 22/63 (34%), Positives = 28/63 (44%)
 Frame = -1

Query: 471 SDEIPLLSPKASDRSFNPRSSSEPLALVRPGISPA*SADWPVLRPKVFRAPLTGLSPRMP 292
           S + P+  PK  +R+ NP  +   LAL    +SPA S   P L PK    P T       
Sbjct: 279 SKQPPVPPPKPQNRNSNPLMAELSLALAGNTLSPAGSRPSPPLPPKRAMPPSTDAVTNKE 338

Query: 291 KGL 283
           K L
Sbjct: 339 KAL 341


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 664,512,858
Number of Sequences: 1657284
Number of extensions: 13552783
Number of successful extensions: 29426
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 28622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 29419
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 48955894634
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)