Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0339
         (648 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0874 - 21205506-21205685,21205825-21205998,21206114-212062...    31   1.0  
03_02_0972 - 12816807-12817016,12817099-12817215,12817963-128181...    30   1.4  
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440...    29   3.2  
02_05_0283 + 27456590-27456773,27458216-27458262,27458310-27458564     29   3.2  
11_01_0752 - 6327269-6327764,6328571-6328839                           28   7.4  
06_03_0930 - 26038341-26038508,26039114-26039254,26040799-260408...    27   9.7  

>10_08_0874 -
           21205506-21205685,21205825-21205998,21206114-21206249,
           21206622-21206794,21207612-21207839
          Length = 296

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = -2

Query: 320 H*QVCLRGCPKVYSVYPAAC-YSYGQWAAQDIGKKPRSQWSRVNKGYADNHQ 168
           H ++  RG PK Y+   + C + Y  W A+  G  P  QW ++   YA N +
Sbjct: 217 HSKMEARGWPKRYAHNFSDCQFEYDDWLAEQCGHPPIEQWRKLM--YAANSE 266


>03_02_0972 -
           12816807-12817016,12817099-12817215,12817963-12818111,
           12818192-12818405,12818505-12818666
          Length = 283

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 1/63 (1%)
 Frame = +2

Query: 131 SLGHHGVHTADIVGDYRRNL-CLLCSIDSGASFQCPEQPIARMNNKPLDILNKPLGILGD 307
           ++G+   H   + G Y  +L C L     GA  +  E  + R+N K  D  NK     GD
Sbjct: 187 TVGYGAHHNLRLEGSYTNSLVCRLKHAKRGALLEIYESKVVRVNGKSFDKTNKVTLCGGD 246

Query: 308 KPV 316
           + V
Sbjct: 247 EVV 249


>08_01_0004 +
           39265-39440,39545-39652,41955-43528,43650-43996,
           44090-44322,45308-45412,45531-45705,46443-46658
          Length = 977

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -1

Query: 504 FKGFERRCGSCSDEIPLLSPKAS-DRSFNPRSSSEPLALVRPGISPA*SADWPVLRP 337
           FK F+   GS      L SP+ S D S +  SSS P+ L+R  +    +  W    P
Sbjct: 110 FKPFQHTDGSSHSSSELASPEDSLDLSSSSSSSSPPIILLRLNVPHESNKSWADTSP 166


>02_05_0283 + 27456590-27456773,27458216-27458262,27458310-27458564
          Length = 161

 Score = 29.1 bits (62), Expect = 3.2
 Identities = 18/37 (48%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
 Frame = +3

Query: 96  LPLTHTAS-ESISPLDIMAFTQQILLVIIGVTFVYSA 203
           LPL++  S +S  PLD MA    ILLVI+ V  V  A
Sbjct: 118 LPLSYPPSAQSFHPLDAMAEVSLILLVIVTVASVILA 154


>11_01_0752 - 6327269-6327764,6328571-6328839
          Length = 254

 Score = 27.9 bits (59), Expect = 7.4
 Identities = 24/67 (35%), Positives = 29/67 (43%)
 Frame = -1

Query: 489 RRCGSCSDEIPLLSPKASDRSFNPRSSSEPLALVRPGISPA*SADWPVLRPKVFRAPLTG 310
           RRC          +P AS  SF+P S S P  L  P   P  S +       V  +P TG
Sbjct: 57  RRCRPTQSPSTSGAPAASSPSFSPASPSCPAKLRSP---PPTSGE----PSAVHASPPTG 109

Query: 309 LSPRMPK 289
            SPR P+
Sbjct: 110 GSPRPPR 116


>06_03_0930 -
           26038341-26038508,26039114-26039254,26040799-26040858,
           26040972-26041034,26041444-26041454,26041722-26041802,
           26042783-26043020,26043563-26043997
          Length = 398

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 21/69 (30%), Positives = 28/69 (40%), Gaps = 1/69 (1%)
 Frame = +3

Query: 12  GRWHPL-IAVL*LMTFAIKIHFCGFPLVILPLTHTASESISPLDIMAFTQQILLVIIGVT 188
           GRW P+ + +  L   A    FC        LT   +  ISP  I+  T  I  V +G  
Sbjct: 167 GRWVPVRLPLPSLQPRAAAYRFCPICPFASSLTSGGNPVISPALILDLTSSIAFVAVGSG 226

Query: 189 FVYSAPLTP 215
              +AP  P
Sbjct: 227 PCRTAPADP 235


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,892,163
Number of Sequences: 37544
Number of extensions: 374270
Number of successful extensions: 811
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 794
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 811
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1608522592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)