Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0339
         (648 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.46 
SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)           29   3.3  
SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_11533| Best HMM Match : Baculo_PEP_C (HMM E-Value=3.6)              28   7.5  
SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  
SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)                 28   7.5  
SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.5  

>SB_58790| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1005

 Score = 31.9 bits (69), Expect = 0.46
 Identities = 19/46 (41%), Positives = 25/46 (54%)
 Frame = +1

Query: 436 GSFGT*QRDLIAARPTSSLEAFKCMGVLNSKGQKVPDANRIGTKTG 573
           G+FG    DL +    S  E F   GV+ SKG+KV  +N  GT +G
Sbjct: 446 GNFGCVFDDLSSPTHISKSENFSRRGVVFSKGEKVKCSNYEGTPSG 491


>SB_47057| Best HMM Match : Merozoite_SPAM (HMM E-Value=0.94)
          Length = 969

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 22/78 (28%), Positives = 38/78 (48%), Gaps = 3/78 (3%)
 Frame = -3

Query: 247 NGLLRTLERSPGVNGAE*TKVTPIITNNICCV--NAMMSKGLIDSLAVCVRGNITSGKPQ 74
           NG L     SP V  +     T  I  NI  V   +  S+G+I    +C+RG+  +G+ +
Sbjct: 550 NGKLNHFTGSPSVRTSSERPGTISINENIKSVISKSENSQGVICKNEICMRGDSKNGESK 609

Query: 73  K-CILIANVINYNTAISG 23
           +  + +A V  +N  ++G
Sbjct: 610 RNDLTVAAVSEHNRTMNG 627


>SB_44891| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 743

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 16/36 (44%), Positives = 18/36 (50%)
 Frame = +1

Query: 487 SLEAFKCMGVLNSKGQKVPDANRIGTKTGXLLVXTP 594
           S E  K   VL+   Q VPD N +GT TG   V  P
Sbjct: 81  SKEILKTEKVLSDVNQ-VPDVNTVGTVTGLATVEVP 115


>SB_11533| Best HMM Match : Baculo_PEP_C (HMM E-Value=3.6)
          Length = 491

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 122 LTGCMCQR*YNEWKTTE 72
           +TGC+CQ   +EWK +E
Sbjct: 39  MTGCLCQAIQDEWKRSE 55


>SB_59788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 234

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -1

Query: 468 DEIPLLSPKASDRSFNPRSSSEPLALVRP 382
           DEIP++  K  D+  N  S  +PL L RP
Sbjct: 97  DEIPVVGLKHRDQRSNSCSPGDPLVLERP 125


>SB_57926| Best HMM Match : I-set (HMM E-Value=3.5e-39)
          Length = 788

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +2

Query: 281 NKPLGILGDKPVSGALNTLGLRTGQSADHAGLIP 382
           N P GI G+K    AL     RT ++ D  G+IP
Sbjct: 3   NYPSGITGNKKQMSALTGNKKRTSRARDSVGVIP 36


>SB_32568| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1918

 Score = 27.9 bits (59), Expect = 7.5
 Identities = 8/20 (40%), Positives = 11/20 (55%)
 Frame = +1

Query: 112 QPVSQLVPWTSWRSHSRYCW 171
           + +     W  WRSH+RY W
Sbjct: 277 EQIKTTADWFEWRSHARYRW 296


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,688,205
Number of Sequences: 59808
Number of extensions: 443266
Number of successful extensions: 857
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 856
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1645141000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)