Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0339
         (648 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U50313-4|AAA92328.1|  417|Caenorhabditis elegans Hypothetical pr...    27   8.7  
L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembl...    27   8.7  
AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein...    27   8.7  

>U50313-4|AAA92328.1|  417|Caenorhabditis elegans Hypothetical
           protein F44C4.2 protein.
          Length = 417

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 513 THAFKGFERRCGSCSDEIPLLSPKASDRSFNPRSSSEPLALVRPGISP 370
           T++F+G     GS     P  SP  SD  ++P + S   ++  PGI P
Sbjct: 85  TYSFRGLMEDSGSDEFSTPNGSPAQSD--YSPTNLSRKNSVESPGIDP 130


>L10986-9|AAK93847.2|  808|Caenorhabditis elegans Spindle assembly
           abnormal protein 4 protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -1

Query: 504 FKGFERRCGSCSDEIPLLSPKASDRSFNPRSSSEPLALVRP-----GISPA*SADWP 349
           FK FERR  S      + +  A+  S  P +SSEP     P     G+ P  + +WP
Sbjct: 169 FKAFERRMDSMRSASTITTSLATPSSCAPSNSSEPPTRSTPIMNDLGVGPN-NHNWP 224


>AJ539470-1|CAD62434.1|  808|Caenorhabditis elegans SAS-4 protein
           protein.
          Length = 808

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = -1

Query: 504 FKGFERRCGSCSDEIPLLSPKASDRSFNPRSSSEPLALVRP-----GISPA*SADWP 349
           FK FERR  S      + +  A+  S  P +SSEP     P     G+ P  + +WP
Sbjct: 169 FKAFERRMDSMRSASTITTSLATPSSCAPSNSSEPPTRSTPIMNDLGVGPN-NHNWP 224


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,981,829
Number of Sequences: 27780
Number of extensions: 313088
Number of successful extensions: 633
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 633
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)