Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0339
         (648 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    24   1.1  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   2.5  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -2

Query: 632 IGMINHP*SXFFXGVXTNXSPVLV 561
           +G   HP   F  GV T  +PV++
Sbjct: 688 MGQFEHPNVIFLQGVVTKSNPVMI 711


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.1
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 303 PRMPKGLFSISSGLLFIRAMGCSGHWKEAPESMEQSKQRLRR 178
           P + K L S++      RAM   G  +   E  E+ +QRLR+
Sbjct: 455 PAVTKSLASLTDAENSRRAMENLGDGRNNKEDSEEFRQRLRK 496


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
            protein.
          Length = 1010

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 12/32 (37%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +2

Query: 239  QPIARMNNKPLDILNKPLGILGDKPVS-GALN 331
            +PI+ +    + +  KPLG   D+P+S GAL+
Sbjct: 956  KPISEVIGGAISLDGKPLGFPLDRPLSLGALS 987


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,034
Number of Sequences: 438
Number of extensions: 3810
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)