Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0339
         (648 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g21090.1 68416.m02666 ABC transporter family protein similar ...    28   4.7  
At1g51500.1 68414.m05796 ABC transporter family protein similar ...    28   4.7  
At5g09850.1 68418.m01139 transcription elongation factor-related...    28   6.1  
At1g60350.1 68414.m06795 no apical meristem (NAM) protein-relate...    27   8.1  

>At3g21090.1 68416.m02666 ABC transporter family protein similar to
           ATP-binding cassette, sub-family G (WHITE), member 2
           GB:NP_036050 from [Mus musculus]
          Length = 691

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 293 PKVYSVYPAACYSYGQWAAQ 234
           PK++  YP +  SYG WA Q
Sbjct: 546 PKIFWRYPVSYISYGSWAIQ 565


>At1g51500.1 68414.m05796 ABC transporter family protein similar to
           GB:AAF61569 from [Bombyx mori]
          Length = 687

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -2

Query: 293 PKVYSVYPAACYSYGQWAAQ 234
           PKV+  YP +  SYG WA Q
Sbjct: 547 PKVFWRYPISFMSYGSWAIQ 566


>At5g09850.1 68418.m01139 transcription elongation factor-related
           low similarity to SP|P10712 Transcription elongation
           factor S-II (Transcription elongation factor A) {Mus
           musculus}
          Length = 353

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -1

Query: 627 NDQSPLEQXFHXSXHQQXPGFGSNPI 550
           ++ SP+++  H    QQ P FG +P+
Sbjct: 216 DEDSPVQKALHNGSRQQVPDFGYSPV 241


>At1g60350.1 68414.m06795 no apical meristem (NAM) protein-related
           contains Pfam PF02365 : No apical meristem (NAM)
           protein; similar to CUP-SHAPED COTYLEDON1 (CUC1)
           (GI:12060422)  [Arabidopsis thaliana]
          Length = 320

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
 Frame = -3

Query: 175 ITNNICCVNAMMSKGLIDSL----AVCVRGNITSGKPQKCI 65
           +TNN+ C++ +    L D +      C+  N T GK  +CI
Sbjct: 207 VTNNVYCLHPLELVDLQDRMFNDYGTCIFANKTCGKTDRCI 247


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,691
Number of Sequences: 28952
Number of extensions: 299513
Number of successful extensions: 707
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 687
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 707
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)