Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0338
         (623 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    42   7e-05
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    30   0.24 
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    28   1.3  
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    28   1.3  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   5.1  
SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces po...    26   5.1  
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   8.9  
SPBC21D10.06c |map4||cell agglutination protein Map4|Schizosacch...    25   8.9  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 41.9 bits (94), Expect = 7e-05
 Identities = 23/44 (52%), Positives = 28/44 (63%), Gaps = 1/44 (2%)
 Frame = +2

Query: 374 LMLSKSRLTSLVVLTSMAGYALAPAP-FQLTTFAFCAVGTGLVS 502
           L L K RLT LVVL++M+ YALAP P     T A+  +GT L S
Sbjct: 88  LELGKPRLTVLVVLSTMSSYALAPYPGLSFNTLAWLTMGTALCS 131


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 17/49 (34%), Positives = 23/49 (46%)
 Frame = +3

Query: 123 KVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLARISTAQNWRVKFHL 269
           K+  C    K+  +G+  KPVLF +    +      I TAQ W  K HL
Sbjct: 535 KLKDCIFLFKNTLLGI--KPVLFGLKQRNIPLANGSIFTAQEWSEKLHL 581


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 411 TTNDVNRDLDSIKQYCPVLLFLXY 340
           +T  +NR+L+ IK+YC V+  L +
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 10/24 (41%), Positives = 17/24 (70%)
 Frame = -3

Query: 411 TTNDVNRDLDSIKQYCPVLLFLXY 340
           +T  +NR+L+ IK+YC V+  L +
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 99  INLIMSYLKVIHCTLCLKHGYVGVYS-----KPVLFKITNNTLFQHLARISTAQ 245
           IN + ++  ++ C++CL   YVG +S       +L  +T  TL   +   +TAQ
Sbjct: 324 INSVKTFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFATAQ 377


>SPAP27G11.10c |nup184||nucleoporin Nup184|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1564

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 18/80 (22%), Positives = 34/80 (42%)
 Frame = +2

Query: 221 SCQNINSTKLESKVPLKTQTTATVKNXVTQDTRVWKETPSYXRKSNTGQYCLMLSKSRLT 400
           S +N++  K E  +  +      +++ VT      K T     K +       +SKS+L 
Sbjct: 18  SDENLSQNKFEELLDARIAAFQQIESPVTGTLNSNKTTEGEEAKLSIYDSSHSISKSQLE 77

Query: 401 SLVVLTSMAGYALAPAPFQL 460
           S+  ++ + GY  A   + L
Sbjct: 78  SVKKISDITGYNEAQVAYVL 97


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = -2

Query: 331 FLPYSGVLGDXILYRCSCLSF 269
           F P SG+ G  ++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175


>SPBC21D10.06c |map4||cell agglutination protein
           Map4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 948

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +2

Query: 227 QNINSTKLESKVPLKTQTTATVKNXVTQDTRVWKETPS 340
           Q I+S+   S  P+   +++T  +  +QD+     TPS
Sbjct: 266 QTIDSSSFTSSTPVSLTSSSTSSSGSSQDSTTIDSTPS 303


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,508,639
Number of Sequences: 5004
Number of extensions: 49424
Number of successful extensions: 97
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)