Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0338
         (623 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)                      29   3.1  
SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)                   29   4.1  
SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.1  
SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.4  

>SB_58944| Best HMM Match : fn3 (HMM E-Value=0.88)
          Length = 697

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 14/46 (30%), Positives = 21/46 (45%)
 Frame = -1

Query: 266 VELYSPVLCC*YSGKMLEECVISNFK*XWFRVNSHVSMFQAQGTVY 129
           VE Y P+       K++E CV +  +    ++   VS F    TVY
Sbjct: 336 VENYRPISLLSVVSKIMERCVFNKIRERLSKITRSVSAFDISNTVY 381


>SB_1224| Best HMM Match : bZIP_1 (HMM E-Value=8e-10)
          Length = 496

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/58 (29%), Positives = 29/58 (50%)
 Frame = +2

Query: 338 SYXRKSNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAQ 511
           S  R S T Q C+ + +  L  + + +++   A+ PAP Q+     CA  T   S+A+
Sbjct: 116 SSARGSYTDQLCITVKRYNLLCICIESNVT-LAMIPAPKQIAKTHACATSTITSSSAE 172


>SB_20138| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 860

 Score = 27.9 bits (59), Expect = 7.1
 Identities = 17/56 (30%), Positives = 24/56 (42%)
 Frame = +2

Query: 224 CQNINSTKLESKVPLKTQTTATVKNXVTQDTRVWKETPSYXRKSNTGQYCLMLSKS 391
           CQ   +   E K PL+   T+     VT D         Y + S   QYCL++ +S
Sbjct: 599 CQQRRNPVPEYKAPLRPIVTSRTGELVTMDV------VEYPKSSPGSQYCLVMGRS 648


>SB_23494| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1013

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +1

Query: 430  IRTSTCPVSTYYLCILRCGYRSSISCTNS 516
            IRT+  P+    L   RCG   S+SC+ +
Sbjct: 954  IRTTANPLPRLILLYCRCGINDSVSCSRT 982


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,856,621
Number of Sequences: 59808
Number of extensions: 372893
Number of successful extensions: 701
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 622
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 701
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1548368000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)