Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0338
         (623 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical...    40   0.001
AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical...    40   0.001
Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical ...    28   4.7  
AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode asta...    28   4.7  
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr...    27   8.2  
U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    27   8.2  
U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical p...    27   8.2  
L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical pr...    27   8.2  

>AL110485-34|CAB60348.3|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = +1

Query: 448 PVSTYYLCILRCGYRSSISCTNSINQYHEVPFDAQCRGXKNRVLVKXLLEPVHAXGFA 621
           PV+   L     G     S  N+ NQ  E P+DAQ R  + RVLV     P+HA  FA
Sbjct: 118 PVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQMRRTQTRVLVVHRFSPLHAFTFA 175



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 374 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAA 508
           L L KS+L+  V  T+  G  +AP P    +     VGT L+S+A
Sbjct: 93  LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSA 137


>AL110484-29|CAE48674.1|  397|Caenorhabditis elegans Hypothetical
           protein Y46G5A.2 protein.
          Length = 397

 Score = 39.9 bits (89), Expect = 0.001
 Identities = 23/58 (39%), Positives = 28/58 (48%)
 Frame = +1

Query: 448 PVSTYYLCILRCGYRSSISCTNSINQYHEVPFDAQCRGXKNRVLVKXLLEPVHAXGFA 621
           PV+   L     G     S  N+ NQ  E P+DAQ R  + RVLV     P+HA  FA
Sbjct: 118 PVAADSLIAATVGTFLLSSAANACNQLLEAPYDAQMRRTQTRVLVVHRFSPLHAFTFA 175



 Score = 32.7 bits (71), Expect = 0.22
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 374 LMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAA 508
           L L KS+L+  V  T+  G  +AP P    +     VGT L+S+A
Sbjct: 93  LALCKSKLSLFVASTATCGVLMAPVPVAADSLIAATVGTFLLSSA 137


>Z74036-3|CAA98488.1|  517|Caenorhabditis elegans Hypothetical
           protein F55C10.4 protein.
          Length = 517

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 18/83 (21%), Positives = 38/83 (45%)
 Frame = +1

Query: 304 HPRHQSMEGNTIIXQEEQYGTVLFDAI*ITVNIISCVDVYGRIRTSTCPVSTYYLCILRC 483
           +P+ +S+  N ++         ++  +   +N+I          T+   +ST +  I RC
Sbjct: 59  YPKSKSLGENAVVLVTTMNKRTMWKILDYKINMIGTNQ--STHHTTRASLSTEHRIIERC 116

Query: 484 GYRSSISCTNSINQYHEVPFDAQ 552
            Y   I+ TNSI+   ++  +A+
Sbjct: 117 DYMLIIAQTNSIDNMDKLEIEAE 139


>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 90  ARRINLIMSYLKVIHCTLCLKHGYVGVY 173
           A+RI L  SYL +IH   CL   Y  +Y
Sbjct: 443 AKRIALFSSYLFIIHPVFCLNITYFHLY 470


>AC006722-4|AAK68419.2|  279|Caenorhabditis elegans Hypothetical
           protein Y19D10A.6 protein.
          Length = 279

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 155 WIRGSLLETSXI*NY**HTLPASCQNINSTKLESKVPLKTQTTATVKNXVTQDT 316
           W R     TS I N   +T    C+N+ S+KL  KVP+   +T+T     T  T
Sbjct: 225 WQRRDHFSTSDIINI--NTF-YKCKNLLSSKLAPKVPISPTSTSTTAITTTNTT 275


>AC006645-9|AAF39841.2|  293|Caenorhabditis elegans Nematode astacin
           protease protein 2 protein.
          Length = 293

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 19/54 (35%), Positives = 26/54 (48%)
 Frame = +2

Query: 155 WIRGSLLETSXI*NY**HTLPASCQNINSTKLESKVPLKTQTTATVKNXVTQDT 316
           W R     TS I N   +T    C+N+ S+KL  KVP+   +T+T     T  T
Sbjct: 239 WQRRDHFSTSDIINI--NTF-YKCKNLLSSKLAPKVPISPTSTSTTAITTTNTT 289


>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical protein
            ZC84.6 protein.
          Length = 1474

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 11/35 (31%), Positives = 15/35 (42%)
 Frame = -3

Query: 588  PFDKHPVLGPSTLGIKWYFMILIYRVCAADTRPVP 484
            PF+ H    P T   +W      Y+ C +D  P P
Sbjct: 946  PFNPHNQGCPGTFSCQWSIRTQRYQCCGSDPLPTP 980


>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 14/39 (35%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
 Frame = -3

Query: 438 SAYPAIDVNTTNDVNRD--LDSIKQYCPVLLFLXYDGVS 328
           S Y  ++  T +D  +D  ++SIKQYC  ++++  DG S
Sbjct: 107 SCYSNLNCTTKSDDEKDKYVESIKQYCDAVVYVS-DGFS 144


>U61946-10|AAC24388.1| 1827|Caenorhabditis elegans Hypothetical
            protein F47C12.1 protein.
          Length = 1827

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -2

Query: 511  LCS*Y*TCTHSAECKGSKLKRGRC*CV 431
            +CS    C + A C G KL R +C CV
Sbjct: 1788 ICSTNNPCRNGARCIGEKLGRFKCQCV 1814


>L15314-4|AAF99988.2|  618|Caenorhabditis elegans Hypothetical
           protein K06H7.3 protein.
          Length = 618

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/65 (26%), Positives = 27/65 (41%), Gaps = 2/65 (3%)
 Frame = +2

Query: 293 KNXVTQDTRVWKETPSYXRKSNTGQYCLMLSKSRLTSL--VVLTSMAGYALAPAPFQLTT 466
           K    +D    +E   Y   S   +  L + + RL  L  ++     G  L P PFQ + 
Sbjct: 542 KEIAKRDVEEMEERQKYVNMSEREKRALAVDR-RLAGLPPILRCHQCGVQLPPTPFQYSH 600

Query: 467 FAFCA 481
           + FC+
Sbjct: 601 YNFCS 605


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,880,977
Number of Sequences: 27780
Number of extensions: 280707
Number of successful extensions: 584
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 584
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)