Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0338
         (623 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.4  
AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced prot...    21   7.4  
AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced prot...    21   7.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 2.4
 Identities = 12/38 (31%), Positives = 18/38 (47%)
 Frame = +2

Query: 209 TLPASCQNINSTKLESKVPLKTQTTATVKNXVTQDTRV 322
           +LPAS  +INS  +E  V    +T  T      + T +
Sbjct: 858 SLPASSTSINSITVEKDVINDVKTQITTNTPAKKATNI 895


>AB264335-1|BAF44090.1|   87|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 87

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 499 Y*TCTHSAECKGSKLKRGRC 440
           Y  CT + +C   ++ R RC
Sbjct: 52  YRPCTKNQQCSILRINRNRC 71


>AB264313-1|BAF43600.1|  900|Apis mellifera ecdysone-induced protein
           75 protein.
          Length = 900

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 7/20 (35%), Positives = 11/20 (55%)
 Frame = -2

Query: 499 Y*TCTHSAECKGSKLKRGRC 440
           Y  CT + +C   ++ R RC
Sbjct: 101 YRPCTKNQQCSILRINRNRC 120


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,942
Number of Sequences: 438
Number of extensions: 3766
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18582456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)