Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0338
         (623 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g44520.1 68415.m05535 UbiA prenyltransferase family protein s...    28   4.4  
At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein, ...    28   5.8  
At1g04200.1 68414.m00410 expressed protein Contains similarity t...    28   5.8  
At5g19970.1 68418.m02377 expressed protein  ; expression support...    27   7.7  
At3g23550.1 68416.m02963 MATE efflux family protein similar to r...    27   7.7  

>At2g44520.1 68415.m05535 UbiA prenyltransferase family protein
           similar to SP|Q12887 Protoheme IX farnesyltransferase,
           mitochondrial precursor (EC 2.5.1.-) (Heme O synthase)
           {Homo sapiens}, SP|P21592 COX10 {Saccharomyces
           cerevisiae}
          Length = 431

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 2/45 (4%)
 Frame = +2

Query: 380 LSKSRLTSLVVLTSMAGYALAP--APFQLTTFAFCAVGTGLVSAA 508
           LSK++L+ LVV TS  GY L    A        +   GT +++A+
Sbjct: 101 LSKAKLSMLVVATSGTGYILGTGNAAISFPGLCYTCAGTMMIAAS 145


>At3g62090.1 68416.m06976 basic helix-loop-helix (bHLH) protein,
           putative very strong similarity to PIF3 like basic Helix
           Loop Helix protein 2 (PIL2) [Arabidopsis thaliana]
           GI:22535494
          Length = 346

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = -3

Query: 501 DTRPVPTAQNAKVVS*NGAGASAYPAIDVNTTNDVNRDLDSIKQYCP 361
           D RP   A+  K +      A AY + + N  ND+N+ + +++   P
Sbjct: 153 DARPQVPARTRKALVKRKRNAEAYNSPERNQRNDINKKMRTLQNLLP 199


>At1g04200.1 68414.m00410 expressed protein Contains similarity to
           gb|Z69902 from C. elegans
          Length = 732

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = -1

Query: 419 TSTQLMMLTVI*IASNNTVPYCSSXHMMVFPSILW 315
           +S Q+ M+ ++ +  +    + SS H M+ PS+ W
Sbjct: 417 SSNQIYMMLIVLLILSQDSSFNSSIHKMILPSVPW 451


>At5g19970.1 68418.m02377 expressed protein  ; expression supported
           by MPSS
          Length = 363

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = +3

Query: 168 VYSKPVLFKITNNTLFQHLARISTAQNWRVK 260
           V ++PVLF   +NT   H        NW VK
Sbjct: 145 VNNRPVLFTYYSNTATWHTKETEDTTNWEVK 175


>At3g23550.1 68416.m02963 MATE efflux family protein similar to
           ripening regulated protein DDTFR18 [Lycopersicon
           esculentum] GI:12231296; contains Pfam profile: PF01554
           uncharacterized membrane protein family
          Length = 469

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = +2

Query: 353 SNTGQYCLMLSKSRLTSLVVLTSMAGYALAPAPFQLTTFAFCAVGTGLVSAAQTL 517
           +N   YC+ L+     S +    +AG  LA +   +T FAF    TGL  A +TL
Sbjct: 45  TNLFYYCIPLTSVMFASQLGQLELAGATLANSWATVTGFAFM---TGLSGALETL 96


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,928,360
Number of Sequences: 28952
Number of extensions: 251801
Number of successful extensions: 498
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)