Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0337
         (415 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch...    35   0.004
SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein L3|Sch...    29   0.38 
SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3 |Schiz...    29   0.38 
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces...    28   0.50 
SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   2.7  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    26   2.7  
SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces po...    25   4.7  
SPBC800.07c |tsf1||mitochondrial translation elongation factor E...    24   8.1  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    24   8.1  

>SPBC365.02c |cox10||protoheme IX
           farnesyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 387

 Score = 35.1 bits (77), Expect = 0.004
 Identities = 17/26 (65%), Positives = 20/26 (76%)
 Frame = +2

Query: 308 LMLSKSRLTSLVVLTSMAGYALAPAP 385
           L L K RLT LVVL++M+ YALAP P
Sbjct: 88  LELGKPRLTVLVVLSTMSSYALAPYP 113


>SPAPB8E5.06c |rpl302|rpl3-2, rpl3-b|60S ribosomal protein
           L3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 345 TTNDVNRDLDSIKQYCPVLLFLSY 274
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPAC17A5.03 |rpl301|rpl3-1, rpl3|60S ribosomal protein L3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 28.7 bits (61), Expect = 0.38
 Identities = 10/24 (41%), Positives = 18/24 (75%)
 Frame = -2

Query: 345 TTNDVNRDLDSIKQYCPVLLFLSY 274
           +T  +NR+L+ IK+YC V+  L++
Sbjct: 140 STQSINRELERIKKYCSVVRVLAH 163


>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3699

 Score = 28.3 bits (60), Expect = 0.50
 Identities = 17/72 (23%), Positives = 32/72 (44%)
 Frame = +3

Query: 57  KVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLARISTAQNWRSKVPLKTQTTATVKNK 236
           K+  C    K+  +G+  KPVLF +    +      I TAQ W  K+ L +     +  +
Sbjct: 535 KLKDCIFLFKNTLLGI--KPVLFGLKQRNIPLANGSIFTAQEWSEKLHLSSTNEVLLFRR 592

Query: 237 VTQDTRYGRKHH 272
           +  ++  G  ++
Sbjct: 593 LLVESLKGFSYY 604


>SPBC530.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 541

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 266 FPSISGVLGDFILYRCSCLSF 204
           F  +SG+ G F++Y C+ L F
Sbjct: 155 FAPLSGIYGRFVVYFCTLLMF 175


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 2.7
 Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
 Frame = +3

Query: 33  INLIMSYLKVIHCTLCLKHGYVGVYS-----KPVLFKITNNTLFQHLARISTAQ 179
           IN + ++  ++ C++CL   YVG +S       +L  +T  TL   +   +TAQ
Sbjct: 324 INSVKTFGSLLTCSVCLFLTYVGGFSVHMMKTTMLIGLTATTLIIFILYFATAQ 377


>SPCC4B3.08 |||C-terminal domain kinase I |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 218

 Score = 25.0 bits (52), Expect = 4.7
 Identities = 23/76 (30%), Positives = 35/76 (46%)
 Frame = +3

Query: 30  RINLIMSYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLARISTAQNWRSKVPLKT 209
           R+N IM ++  + C +CLK+G  G Y   +   I    L Q++A I  A    +    K 
Sbjct: 57  RVN-IMYFVDTL-CEMCLKNGLTGGYLNMISRDICK--LVQNVAPIGAAGAANAPEVRKV 112

Query: 210 QTTATVKNKVTQDTRY 257
             +   K KV  D +Y
Sbjct: 113 LQSLHEK-KVIDDNQY 127


>SPBC800.07c |tsf1||mitochondrial translation elongation factor
           EF-Ts Tsf1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 299

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 15/61 (24%), Positives = 27/61 (44%), Gaps = 2/61 (3%)
 Frame = +3

Query: 129 ITNNTLFQHLAR--ISTAQNWRSKVPLKTQTTATVKNKVTQDTRYGRKHHHMTGRAIRDS 302
           +   T FQ LAR   ST  ++           AT+KN++ +   Y  K+H    + +  +
Sbjct: 118 VAQTTPFQDLARRIASTFLHYLPTNHSSYSVEATLKNEILKHQAYVSKNHEANEKDVSSN 177

Query: 303 I 305
           +
Sbjct: 178 V 178


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 24.2 bits (50), Expect = 8.1
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -1

Query: 163 LARCWKSVLLVILNXTG 113
           L RCW+ +L +IL  TG
Sbjct: 218 LGRCWRGLLWLILFITG 234


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,772,926
Number of Sequences: 5004
Number of extensions: 35737
Number of successful extensions: 91
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 91
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 144287194
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)