Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0337
         (415 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_01_0486 - 3495792-3496034,3496862-3496934,3497128-3497422,349...    32   0.21 
05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488     30   0.64 
06_03_0021 + 15520342-15520443,15522217-15522867,15522980-155231...    28   3.4  
02_05_1184 + 34802749-34802892,34802981-34803220,34803636-348039...    28   3.4  
04_04_1031 - 30254665-30255794,30256181-30257036                       27   4.5  

>02_01_0486 -
           3495792-3496034,3496862-3496934,3497128-3497422,
           3497585-3497759,3498349-3498795,3499994-3500053
          Length = 430

 Score = 31.9 bits (69), Expect = 0.21
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 5/77 (6%)
 Frame = +2

Query: 161 QNINSTKLEK*SST*NSDNCNG--KE*SHPRHQIWKETPSYDRKSNTGQYCL---MLSKS 325
           QN+  T L     T N    NG  +  +HP H+ WKETP     S    +C    +L K 
Sbjct: 295 QNLPVTLLRIQIRTVNRQPRNGVQQRAAHP-HRFWKETPVLVMVSTLAYFCFLEQLLLKM 353

Query: 326 RLTSLVVLTSMAGYALA 376
                ++L S  G+ +A
Sbjct: 354 GAVLAILLASFTGFGIA 370


>05_04_0314 - 20133281-20133824,20133911-20134991,20135116-20135488
          Length = 665

 Score = 30.3 bits (65), Expect = 0.64
 Identities = 25/79 (31%), Positives = 32/79 (40%), Gaps = 3/79 (3%)
 Frame = +3

Query: 78  CLKHGYVGVYSKPVLFKITNNTLFQHL-ARISTAQN--WRSKVPLKTQTTATVKNKVTQD 248
           CL H     Y          N L  H  A IS  +N  WR K+   T    TVK++  + 
Sbjct: 477 CLAHSLNPRYYSDSWINQAANRLPPHRDAEISRVRNNCWR-KLFFTTDNLRTVKSEYGEF 535

Query: 249 TRYGRKHHHMTGRAIRDSI 305
              G KH  +  RA RD +
Sbjct: 536 ALLGTKHFSLNSRADRDKL 554


>06_03_0021 +
           15520342-15520443,15522217-15522867,15522980-15523186,
           15523698-15523913,15523992-15524214,15525052-15525299,
           15525385-15525563,15525803-15526056,15526237-15526388
          Length = 743

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 15/44 (34%), Positives = 25/44 (56%)
 Frame = -3

Query: 371 VRILP*TSTQLMMLTVI*IASNNTVPYCSSCHMMVFPSISGVLG 240
           +R LP    +L++ TV   AS  T PY  +  +++FPS+  + G
Sbjct: 123 LRSLPLGVPKLIVSTV---ASGQTAPYVGTSDLVLFPSVVDICG 163


>02_05_1184 +
           34802749-34802892,34802981-34803220,34803636-34803950,
           34804030-34804209,34804312-34804504,34805062-34805324,
           34805461-34805590,34805719-34805786,34805951-34806199,
           34806284-34806357,34808052-34808143,34808603-34808685,
           34810337-34810408,34810558-34810683,34810996-34811037
          Length = 756

 Score = 27.9 bits (59), Expect = 3.4
 Identities = 14/39 (35%), Positives = 20/39 (51%)
 Frame = +3

Query: 48  SYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLAR 164
           +Y   I   LC +  Y+ + S  VL   T+N  +QHL R
Sbjct: 245 TYFSQIFFYLCSQDCYIDICSPEVLSLFTDNFDYQHLRR 283


>04_04_1031 - 30254665-30255794,30256181-30257036
          Length = 661

 Score = 27.5 bits (58), Expect = 4.5
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = +3

Query: 129 ITNNTLFQHLARISTAQNWRSKVPLKTQTTATV 227
           ITN  LF HL   S   +W  ++ +  +T + +
Sbjct: 429 ITNGALFSHLQNTSVLISWEDRLRIAVETASAL 461


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,072,665
Number of Sequences: 37544
Number of extensions: 210739
Number of successful extensions: 446
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 446
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 742607976
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)