Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0337
         (415 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_17863| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   2.6  
SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27)                 28   2.6  
SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)                 28   3.5  
SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)              27   6.1  
SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)                    27   6.1  
SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   8.1  

>SB_17863| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 148

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +3

Query: 180 NWRSKVPLKTQTTATVKNKVTQDTRYGRKHHHMTGRAIR 296
           +W+ K+P   + T  + +  TQ TR+G    HM    +R
Sbjct: 99  SWQVKLPSVDRNTVMLYSGYTQTTRHGHLGVHMNSATLR 137


>SB_17732| Best HMM Match : RVT_1 (HMM E-Value=1.5e-27)
          Length = 399

 Score = 28.3 bits (60), Expect = 2.6
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +3

Query: 159 ARISTAQNWRSKVPLKTQTTATVKNKVTQDTRYGRKHHHMTGRAI 293
           AR +    +  KV  K      +KN +  D +YG + HH T  A+
Sbjct: 61  ARSAVFSKFFEKVVYKRLYNFLLKNNILFDNQYGFRKHHSTALAL 105


>SB_7580| Best HMM Match : Topoisom_bac (HMM E-Value=0)
          Length = 856

 Score = 27.9 bits (59), Expect = 3.5
 Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
 Frame = +3

Query: 78  CLKHGYVGVY-SKPVLFKITNNTLFQHLARIS---TAQNWRSKVPLKTQTTATVKNKVTQ 245
           C  H Y G + ++PV FK+T+  +  H+  +       NW +  PL+  T  T+K + T+
Sbjct: 36  CSVHEYSGSFRNEPVKFKMTS--VCGHVMSLDFHHKYNNWDAVDPLELFTATTLKKEATE 93


>SB_7933| Best HMM Match : GCC2_GCC3 (HMM E-Value=1.4e-18)
          Length = 1023

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -2

Query: 300 CPVLLFLSYDGVSFHIWCLG*LYSLPLQLSE 208
           CPV  +   DG+S+HI C    Y+  +  +E
Sbjct: 496 CPVGSYCPTDGLSYHITCANGTYTTAVNQTE 526


>SB_28063| Best HMM Match : ABC_tran (HMM E-Value=0)
          Length = 1238

 Score = 27.1 bits (57), Expect = 6.1
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = +3

Query: 24   ARRINLIMSYLKVIHCTLCLKHGYVGVYSKPVLFKITNNTLFQHLAR 164
            A R+N IM Y KV+     +  G V  Y +P +    ++  F HL R
Sbjct: 1186 AHRVNTIMDYDKVV----VIDTGRVVEYGEPEILARKSDGFFAHLVR 1228


>SB_26886| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 6489

 Score = 26.6 bits (56), Expect = 8.1
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = -2

Query: 375  ASAYPAIDVNTTNDVNRDLDSIKQYCPVLLFLSYDG 268
            +SA  ++D N+ + ++   DS+ +  P   FLSY G
Sbjct: 1739 SSAGVSLDHNSADTLDETFDSVHEEVPDTRFLSYKG 1774


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,158,755
Number of Sequences: 59808
Number of extensions: 266078
Number of successful extensions: 577
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 517
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 16,821,457
effective HSP length: 75
effective length of database: 12,335,857
effective search space used: 764823134
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)