Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0337
         (415 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical p...    29   1.0  
AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine re...    29   1.3  
Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical pr...    28   2.3  
AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical...    27   7.1  
AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPas...    26   9.4  
AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical ...    26   9.4  

>U97008-11|AAK72054.1|  224|Caenorhabditis elegans Hypothetical
           protein C03G6.5 protein.
          Length = 224

 Score = 29.5 bits (63), Expect = 1.0
 Identities = 15/39 (38%), Positives = 25/39 (64%), Gaps = 2/39 (5%)
 Frame = -2

Query: 372 SAYPAIDVNTTNDVNRD--LDSIKQYCPVLLFLSYDGVS 262
           S Y  ++  T +D  +D  ++SIKQYC  ++++S DG S
Sbjct: 107 SCYSNLNCTTKSDDEKDKYVESIKQYCDAVVYVS-DGFS 144


>AC006675-3|AAK84550.1|  335|Caenorhabditis elegans Serpentine
           receptor, class h protein35 protein.
          Length = 335

 Score = 29.1 bits (62), Expect = 1.3
 Identities = 10/33 (30%), Positives = 17/33 (51%)
 Frame = -3

Query: 296 PYCSSCHMMVFPSISGVLGDFILYRCSCLSFKW 198
           P+   C +   P   G+L   I + C C++F+W
Sbjct: 31  PFTHYCVLTKSPKSFGILKWIIYFHCCCVTFEW 63


>Z79602-3|CAB01890.1|  474|Caenorhabditis elegans Hypothetical
           protein K09E9.3 protein.
          Length = 474

 Score = 28.3 bits (60), Expect = 2.3
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 24  ARRINLIMSYLKVIHCTLCLKHGYVGVY 107
           A+RI L  SYL +IH   CL   Y  +Y
Sbjct: 443 AKRIALFSSYLFIIHPVFCLNITYFHLY 470


>AF016686-12|AAB66234.1|  723|Caenorhabditis elegans Hypothetical
           protein R07C3.4 protein.
          Length = 723

 Score = 26.6 bits (56), Expect = 7.1
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +3

Query: 255 YGRKHHHMTGRAIRDSIV*CYLNH 326
           Y   H+ MTG+A RD++V  Y+ H
Sbjct: 412 YKLYHYKMTGKATRDTLVDKYILH 435


>AJ010708-1|CAA09308.1| 1158|Caenorhabditis elegans calcium ATPase
            protein.
          Length = 1158

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 93   YVGVYSKPVLFKITNNTLFQHLARISTAQNWRSKVPL 203
            + G+++ P+   I   TL  H+  +     W S  PL
Sbjct: 962  FKGIFTNPIFCVIWITTLISHILIVQFGGQWFSTAPL 998


>AF125446-4|AAD12806.2| 1158|Caenorhabditis elegans Hypothetical
            protein R05C11.3 protein.
          Length = 1158

 Score = 26.2 bits (55), Expect = 9.4
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +3

Query: 93   YVGVYSKPVLFKITNNTLFQHLARISTAQNWRSKVPL 203
            + G+++ P+   I   TL  H+  +     W S  PL
Sbjct: 962  FKGIFTNPIFCVIWITTLISHILIVQFGGQWFSTAPL 998


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,728,286
Number of Sequences: 27780
Number of extensions: 196968
Number of successful extensions: 478
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 467
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 673122114
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)