Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0337
         (415 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   5.5  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    21   7.3  
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    21   7.3  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    21   7.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    20   9.6  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.0 bits (42), Expect = 5.5
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +2

Query: 143 TLPASCQNINSTKLEK 190
           +LPAS  +INS  +EK
Sbjct: 858 SLPASSTSINSITVEK 873


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = -3

Query: 227 YRCSCLSFKWNFTSPVLC 174
           Y C      W  T+P +C
Sbjct: 486 YPCCWWKICWTITTPAIC 503


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/18 (33%), Positives = 8/18 (44%)
 Frame = -3

Query: 227 YRCSCLSFKWNFTSPVLC 174
           Y C      W  T+P +C
Sbjct: 539 YPCCWWKICWTITTPAIC 556


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 242 PRHQIWKETPS 274
           PR+ +W+ET S
Sbjct: 397 PRYMVWRETIS 407


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 242 PRHQIWKETPS 274
           PR+ +W+ET S
Sbjct: 312 PRYMVWRETIS 322


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.6 bits (41), Expect = 7.3
 Identities = 6/11 (54%), Positives = 9/11 (81%)
 Frame = +2

Query: 242 PRHQIWKETPS 274
           PR+ +W+ET S
Sbjct: 631 PRYMVWRETIS 641


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 20.2 bits (40), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = +3

Query: 126 KITNNTLFQHLARISTAQNWRSKVPLKTQTT 218
           +I NN   Q L ++    +W S + L +  T
Sbjct: 66  QIANNVTMQLLPKLMEFDDWTSVMELHSWMT 96


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,664
Number of Sequences: 438
Number of extensions: 2445
Number of successful extensions: 7
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10503195
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)