Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0337
         (415 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01910.1 68417.m00251 DC1 domain-containing protein contains ...    30   0.54 
At4g11550.1 68417.m01852 DC1 domain-containing protein contains ...    29   1.6  
At5g26190.1 68418.m03116 DC1 domain-containing protein contains ...    28   2.2  
At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein, A...    27   5.0  
At1g69910.1 68414.m08045 protein kinase family protein contains ...    27   5.0  
At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B li...    27   6.6  
At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family pro...    26   8.7  
At1g25270.1 68414.m03135 nodulin MtN21 family protein similar to...    26   8.7  

>At4g01910.1 68417.m00251 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 651

 Score = 30.3 bits (65), Expect = 0.54
 Identities = 15/51 (29%), Positives = 29/51 (56%), Gaps = 1/51 (1%)
 Frame = -3

Query: 365 ILP*TSTQLMMLTVI*IASNNTVPYCSSCHM-MVFPSISGVLGDFILYRCS 216
           ++P ++  L  L+ + + ++ + P+CS C M  +FP I  ++G    Y CS
Sbjct: 595 LMPGSTIDLSELSKVVLNNSISRPFCSGCKMHCIFPIILKIVGTSDKYFCS 645


>At4g11550.1 68417.m01852 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 668

 Score = 28.7 bits (61), Expect = 1.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
 Frame = -3

Query: 317 IASNNTV--PYCSSCHM-MVFPSISGVLGDFILYRCS--CLSFKW 198
           +  NN++  P+C +C    ++P I  VLG   LY CS  C+   W
Sbjct: 609 VVRNNSMSRPFCRACESHCMYPIILKVLGSSALYICSLNCVDGFW 653


>At5g26190.1 68418.m03116 DC1 domain-containing protein contains
           Pfam profile PF03107: DC1 domain
          Length = 556

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = -3

Query: 290 CSSCHMMVFPSISGVLGDFIL-YRCSCL 210
           CS+C  MV+ S+S V  DF L ++C+ L
Sbjct: 399 CSACDQMVYGSLSCVKLDFFLCFKCATL 426


>At4g10210.1 68417.m01674 hypothetical protein IB1C3-1 protein,
           Arabidopsis thaliana, AJ011845 contains Pfam profile
           PF03080: Arabidopsis proteins of unknown function
          Length = 375

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 19/68 (27%), Positives = 33/68 (48%), Gaps = 2/68 (2%)
 Frame = +3

Query: 27  RRINLIMSY-LKVIHCTLCLKHGYVGVYSKPVL-FKITNNTLFQHLARISTAQNWRSKVP 200
           +++ LI  + +K+I CT   ++G V  Y +P L   +  N  F H  R+ +     SK+ 
Sbjct: 50  QKLELINKHTVKIIKCTNGERYGCVDFYKQPGLDHSLMKNHTFHHKMRLMSYPE-GSKIK 108

Query: 201 LKTQTTAT 224
            +T    T
Sbjct: 109 KQTHINKT 116


>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 27.1 bits (57), Expect = 5.0
 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 2/67 (2%)
 Frame = +3

Query: 36  NLIMSYLKVIHCTLCLKHGYVGVYSKPVLFK--ITNNTLFQHLARISTAQNWRSKVPLKT 209
           N I+    + H  L   HGY       +L    +TN TL  HL        WR ++ +  
Sbjct: 378 NEILILSSINHPNLVKLHGYCSDPRGLLLVHDYVTNGTLADHLHGRGPKMTWRVRLDIAL 437

Query: 210 QTTATVK 230
           QT   ++
Sbjct: 438 QTALAME 444


>At5g59930.1 68418.m07515 DC1 domain-containing protein / UV-B
           light-insensitive protein, putative similar to ULI3
           (UV-B light insensitive) [Arabidopsis thaliana]
           GI:17225050; contains Pfam profile PF03107: DC1 domain
          Length = 656

 Score = 26.6 bits (56), Expect = 6.6
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 5/65 (7%)
 Frame = -3

Query: 368 RILP*TSTQLMMLTVI*IASN-NTVPYCSSCHMMVFPSISGVL----GDFILYRCSCLSF 204
           R++P  +    + TV  + +N NT P CS CH      +S +L    G+ + + CS   F
Sbjct: 591 RLMPGCTIDYRVYTVEVVFNNHNTRPMCSRCHSRC--KVSVILKFREGNIVYFFCSRSCF 648

Query: 203 KWNFT 189
             +F+
Sbjct: 649 LMHFS 653


>At2g19910.1 68415.m02327 RNA-dependent RNA polymerase family protein
            contains Pfam domain, PF05183: RNA dependent RNA
            polymerase
          Length = 992

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 209  SFKWNFTSPVLCC*YSGKMLEECVISN 129
            +F WN   PVLC  Y  K  ++ V+++
Sbjct: 957  TFAWNVAGPVLCKFYLKKTKDKSVVAS 983


>At1g25270.1 68414.m03135 nodulin MtN21 family protein similar to
           MtN21 GI:2598575 (root nodule development) from
           [Medicago truncatula]
          Length = 345

 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 300 CPVLLFLSYDGVSFHIW 250
           C  L+F+ Y G+  HIW
Sbjct: 138 CGALVFVFYKGIEIHIW 154


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,111,831
Number of Sequences: 28952
Number of extensions: 178658
Number of successful extensions: 403
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 12,070,560
effective HSP length: 74
effective length of database: 9,928,112
effective search space used: 625471056
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)