Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0334
         (461 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    83   2e-17
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    82   3e-17
SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr 1|||M...    58   7e-10
SPAC6G10.04c |||20S proteasome component alpha 6 subunit Pre5|Sc...    24   0.27 
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom...    29   0.46 
SPAC664.03 |||RNA polymerase II associated Paf1 complex |Schizos...    26   2.4  
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    26   2.4  
SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces po...    26   2.4  
SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5 |Schizosacchar...    26   3.2  
SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein Pss1|Sch...    26   3.2  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    25   4.3  
SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr 1|...    25   5.6  
SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr 1||...    25   5.6  
SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr...    25   5.6  
SPBC17D11.05 |tif32||translation initiation factor eIF3a|Schizos...    25   5.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    25   7.4  
SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate syn...    25   7.4  
SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6 |Sch...    24   9.8  
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch...    24   9.8  
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    24   9.8  

>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 83.0 bits (196), Expect = 2e-17
 Identities = 36/68 (52%), Positives = 50/68 (73%)
 Frame = -3

Query: 459 AKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQK 280
           AKN LESY +S++++++D  LK+K+  SDK+ I     +TI+WLD N  A K+EYE KQK
Sbjct: 536 AKNHLESYAYSLRNSLDDPNLKDKVDASDKEAIDKAVKETIEWLDHNTTAAKDEYEDKQK 595

Query: 279 ELEGIYNP 256
           ELEG+ NP
Sbjct: 596 ELEGVANP 603


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 82.2 bits (194), Expect = 3e-17
 Identities = 35/68 (51%), Positives = 51/68 (75%)
 Frame = -3

Query: 459 AKNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQK 280
           AKN LESY +S++++++D  LK+K+  SDK+T+     +TI+WLDSN  A K+E+E KQK
Sbjct: 536 AKNHLESYAYSLRNSLDDPNLKDKVDASDKETVDKAVKETIEWLDSNTTAAKDEFEAKQK 595

Query: 279 ELEGIYNP 256
           ELE + NP
Sbjct: 596 ELESVANP 603


>SPAC22A12.15c |bip1|bip|BiP |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 663

 Score = 58.0 bits (134), Expect = 7e-10
 Identities = 26/70 (37%), Positives = 45/70 (64%), Gaps = 2/70 (2%)
 Frame = -3

Query: 459 AKNALESYCFSMKSTMED-EKLKEKISDSDKQTILDKCNDTIKWLD-SNQLADKEEYEHK 286
           A+N LE+Y +S+K   +D E+L  K+   DKQ +LD   D  +WL+   + A KEE+E +
Sbjct: 566 ARNTLENYAYSLKGQFDDDEQLGGKVDPEDKQAVLDAVEDVAEWLEIHGEDASKEEFEDQ 625

Query: 285 QKELEGIYNP 256
           +++L+ + +P
Sbjct: 626 RQKLDAVVHP 635


>SPAC6G10.04c |||20S proteasome component alpha 6 subunit
           Pre5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 272

 Score = 24.2 bits (50), Expect(2) = 0.27
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = -3

Query: 387 ISDSDKQTILDKCNDTIKWLDSNQLADK 304
           I   +K T+ D+ NDT +WLD  +L DK
Sbjct: 215 IGKDEKYTLYDQ-NDTKEWLD--KLGDK 239



 Score = 23.8 bits (49), Expect(2) = 0.27
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = -3

Query: 237 RVPEESPEVCRASRAEHPEPEVP 169
           ++ ++ P   RASRA   EP+ P
Sbjct: 235 KLGDKGPAAARASRAAAEEPQAP 257


>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 783

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 15/43 (34%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 396 KEKISDSDKQTILD-KCNDTIKWLDSNQLADKEEYEHKQKELE 271
           +EKI   +++TI D K    +   +  ++   EEY  KQKEL+
Sbjct: 427 EEKIDSDEEETIDDAKSEMFVDLSEEEEVRQYEEYRKKQKELQ 469


>SPAC664.03 |||RNA polymerase II associated Paf1 complex
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 457

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 16/75 (21%), Positives = 29/75 (38%)
 Frame = -3

Query: 315 LADKEEYEHKQKELEGIYNPKLRRCTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPS 136
           + D EE E K + +EG  N +L    +  E   ++  A +    +PE     + A    +
Sbjct: 373 IKDLEEEEEKLRSVEGSLNEELSEEEKPAESREQLESAEQTNGVKPETQAQNMSASESQA 432

Query: 135 RRSIKPTFHTTLKPT 91
                P      +P+
Sbjct: 433 NSPAPPVEEGNTQPS 447


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 15/45 (33%), Positives = 19/45 (42%)
 Frame = -3

Query: 258 PKLRRCTRVPEESPEVCRASRAEHPEPEVPPPGLEALAPPSRRSI 124
           P+L  C   PEE PE   +  A     EV  P L  + P   R +
Sbjct: 216 PELINCIAHPEEVPETIHSLGATTFVTEVQAPTLSIMVPLLARGL 260


>SPAC17A2.13c |rad25||14-3-3 protein Rad25|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 270

 Score = 26.2 bits (55), Expect = 2.4
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = -3

Query: 228 EESPEVCRASRAEHPEPE 175
           EE+P    AS  EHPEP+
Sbjct: 244 EEAPAAAAASENEHPEPK 261


>SPAC18B11.06 |||U3 snoRNP-associated protein Lcp5
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 11/42 (26%), Positives = 21/42 (50%)
 Frame = -3

Query: 348 NDTIKWLDSNQLADKEEYEHKQKELEGIYNPKLRRCTRVPEE 223
           N+ +K  D + ++ ++E E  +   +GIY P   R   +  E
Sbjct: 141 NNVVKEDDKSSISSEDEEEELRSAKDGIYRPPRIRAVTMDSE 182


>SPAC110.04c |pss1|ssp1, SPAP14E8.01c|heat shock protein
           Pss1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 720

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 22/90 (24%), Positives = 38/90 (42%), Gaps = 3/90 (3%)
 Frame = -3

Query: 456 KNALESYCFSMKSTMED--EKLKEKISDSDKQTILDKCNDTIKWL-DSNQLADKEEYEHK 286
           KNALE Y +  ++ ++D       +   S  + +L K  D   WL +  +   K  Y  K
Sbjct: 580 KNALEEYIYDTRAKLDDIYAPFTNEEESSKFKEMLTKAED---WLYEEGEDTTKAVYTAK 636

Query: 285 QKELEGIYNPKLRRCTRVPEESPEVCRASR 196
            ++L  +  P  +R     E   +  +A R
Sbjct: 637 LEDLMRVGGPIRQRYLDAEEAKRQKVQAER 666


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = -3

Query: 456 KNALESYCFSMKSTMEDEKLKEKISDSDKQTILDKCNDTIKW 331
           K   E YC S+ ST +  + K  +SD    T+L     T+ W
Sbjct: 284 KEVFEEYCKSVVSTKKITRRKNTLSDF--WTLLHSLPSTLLW 323


>SPAC10F6.08c |||HMG box protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 18/48 (37%), Positives = 26/48 (54%)
 Frame = -3

Query: 414 MEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELE 271
           +E EK KEK  D D++       DT+   D NQ+   +E E  QKE++
Sbjct: 270 LEKEKAKEKQKDKDQE------QDTVS--DKNQI---DEIEKGQKEVD 306


>SPAC19D5.04 |ptr1||HECT domain|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 3227

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 13/64 (20%), Positives = 33/64 (51%), Gaps = 3/64 (4%)
 Frame = -3

Query: 444  ESYCFSMKSTMEDEKLK---EKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKEL 274
            E+   + + +M D+ L    E+ SDSD++   D   +++  +    + ++ +  ++  E 
Sbjct: 1803 EALSGAAQDSMGDQSLSSSSEESSDSDREEPPDLYRNSVLGIFQGDIVNENDENYEDSED 1862

Query: 273  EGIY 262
            +G+Y
Sbjct: 1863 DGVY 1866


>SPCC825.02 |||glucosidase II Gtb1 |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 7/29 (24%), Positives = 18/29 (62%)
 Frame = -3

Query: 414 MEDEKLKEKISDSDKQTILDKCNDTIKWL 328
           +++++++ K+S  D    L+ CN+ +  L
Sbjct: 260 LKEQEIRRKVSSDDVHNYLESCNNHLSML 288


>SPBC17D11.05 |tif32||translation initiation factor
            eIF3a|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 932

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 15/38 (39%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
 Frame = -3

Query: 234  VPEESPEVCRA--SRAEHPEPEVPPPGLEALAPPSRRS 127
            V  +SP   R   SR   P  E   P   A  PPSRR+
Sbjct: 891  VSRDSPRYSRGGYSRGSVPPRETLAPSKGAYVPPSRRN 928


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 13/41 (31%), Positives = 21/41 (51%)
 Frame = -3

Query: 189 HPEPEVPPPGLEALAPPSRRSIKPTFHTTLKPTCNNHLVTS 67
           H    +P     +L+PPS R++KP  H+   P+  + L  S
Sbjct: 169 HLRSSMPLVMANSLSPPSSRALKP-IHSLSNPSTASSLEPS 208


>SPCC126.03 |pus1|SPCC126.03, SPCC126.03|tRNA pseudouridylate
           synthase Lsp1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 534

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 10/17 (58%), Positives = 14/17 (82%)
 Frame = -3

Query: 429 SMKSTMEDEKLKEKISD 379
           S+K  MEDEKL EK+++
Sbjct: 114 SLKLIMEDEKLIEKVNE 130


>SPAC5D6.05 |sep11|pmc6, med18|mediator complex subunit Pmc6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 207

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = -3

Query: 156 EALAPPSRRSIKPTFH 109
           + L P  +RSIKP FH
Sbjct: 142 QTLIPSQQRSIKPPFH 157


>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 750

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 14/58 (24%), Positives = 27/58 (46%)
 Frame = -3

Query: 417 TMEDEKLKEKISDSDKQTILDKCNDTIKWLDSNQLADKEEYEHKQKELEGIYNPKLRR 244
           + E+  +K +  + D    L+   +  + L  N       YEH QK  + ++N +LR+
Sbjct: 616 SFENSNVKTQSVEPDNGLSLEALKNENQTLLKNLEDSTARYEHLQKSFKNVFN-QLRK 672


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 8/16 (50%), Positives = 9/16 (56%)
 Frame = -3

Query: 186 PEPEVPPPGLEALAPP 139
           P P  PPPG+    PP
Sbjct: 761 PPPPPPPPGVAGAGPP 776


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,578,397
Number of Sequences: 5004
Number of extensions: 29512
Number of successful extensions: 151
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)