Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0332
(650 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 159 2e-40
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 159 3e-40
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 159 3e-40
SPCC584.04 |sup35|erf3|translation release factor eRF3 |Schizosa... 95 1e-20
SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related prote... 92 7e-20
SPBC9B6.04c |tuf1||mitochondrial translation elongation factor E... 71 1e-13
SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma su... 34 0.020
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz... 31 0.14
SPCP31B10.07 |eft202||translation elongation factor 2 |Schizosac... 30 0.25
SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation elon... 30 0.25
SPAC19A8.03 |||phosphatidylinositol-3-phosphatase |Schizosacchar... 29 0.77
SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr 3|||Ma... 28 1.3
SPBC660.10 |||translation elongation factor G|Schizosaccharomyce... 28 1.3
SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces po... 27 1.8
SPBC1703.13c |||inorganic phosphate transporter |Schizosaccharom... 27 3.1
SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1 |Schizosacc... 27 3.1
SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces p... 26 4.1
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 26 4.1
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 26 4.1
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 26 4.1
SPCC4G3.09c |gyp3||GTPase activating protein Gyp3|Schizosaccharo... 26 4.1
SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|c... 25 7.2
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 159 bits (387), Expect = 2e-40
Identities = 75/88 (85%), Positives = 80/88 (90%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G IDIALWKFET KY VT+IDA GHRDFIKNMITGTSQADCAVLI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAVLIIGGGTGEFEAGISK 129
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMDS 509
+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDT 157
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +1
Query: 118 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAXRE 243
LIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKA RE
Sbjct: 27 LIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHL 121
MGKEK HIN+VVIGHVDSGKSTTTGHL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 625
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 159 bits (386), Expect = 3e-40
Identities = 74/88 (84%), Positives = 80/88 (90%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G IDIALWKFET KY VT+IDA GHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMDS 509
+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDT 157
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +1
Query: 118 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAXRE 243
LIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKA RE
Sbjct: 27 LIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHL 121
MGKEK HIN+VVIGHVDSGKSTTTGHL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 625
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 159 bits (386), Expect = 3e-40
Identities = 74/88 (84%), Positives = 80/88 (90%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G IDIALWKFET KY VT+IDA GHRDFIKNMITGTSQADCA+LI+ GTGEFEAGISK
Sbjct: 70 GITIDIALWKFETPKYNVTVIDAPGHRDFIKNMITGTSQADCAILIIGGGTGEFEAGISK 129
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMDS 509
+GQTREHALLA+TLGVKQLIV VNKMD+
Sbjct: 130 DGQTREHALLAYTLGVKQLIVAVNKMDT 157
Score = 87.0 bits (206), Expect = 2e-18
Identities = 39/42 (92%), Positives = 40/42 (95%)
Frame = +1
Query: 118 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAXRE 243
LIYKCGGIDKRTIEKFEKEA E+GKGSFKYAWVLDKLKA RE
Sbjct: 27 LIYKCGGIDKRTIEKFEKEATELGKGSFKYAWVLDKLKAERE 68
Score = 57.6 bits (133), Expect = 1e-09
Identities = 25/27 (92%), Positives = 26/27 (96%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHL 121
MGKEK HIN+VVIGHVDSGKSTTTGHL
Sbjct: 1 MGKEKGHINVVVIGHVDSGKSTTTGHL 27
Score = 52.4 bits (120), Expect = 5e-08
Identities = 21/35 (60%), Positives = 29/35 (82%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSYIKKIGYNPAAVAFVPISGW 625
+S+ RFEEI KE S++IKK+G+NP V FVP+SG+
Sbjct: 160 WSQARFEEIVKETSNFIKKVGFNPKTVPFVPVSGF 194
>SPCC584.04 |sup35|erf3|translation release factor eRF3
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 662
Score = 94.7 bits (225), Expect = 1e-20
Identities = 42/87 (48%), Positives = 59/87 (67%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G +++ FET +++DA GH+ ++ NMI G SQAD VL+++A GEFEAG +
Sbjct: 301 GKTVEVGRAYFETEHRRFSLLDAPGHKGYVTNMINGASQADIGVLVISARRGEFEAGFER 360
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMD 506
GQTREHA+LA T G+ L+V +NKMD
Sbjct: 361 GGQTREHAVLARTQGINHLVVVINKMD 387
Score = 46.0 bits (104), Expect = 5e-06
Identities = 19/43 (44%), Positives = 29/43 (67%)
Frame = +1
Query: 115 SLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAXRE 243
++++ G +DKRT+EK E+EA+E GK S+ +W LD RE
Sbjct: 257 NILFLTGMVDKRTMEKIEREAKEAGKESWYLSWALDSTSEERE 299
Score = 37.5 bits (83), Expect = 0.002
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHL 121
K H+NIV IGHVD+GKST G++
Sbjct: 236 KEHVNIVFIGHVDAGKSTLGGNI 258
>SPBC25B2.01 ||SPBC2G5.08|elongation factor 1 alpha related
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 592
Score = 91.9 bits (218), Expect = 7e-20
Identities = 44/90 (48%), Positives = 57/90 (63%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G +D+A FE+ K I DA GHRDFI MI G S AD AVL+V + FE G +
Sbjct: 240 GVTMDVASTTFESDKKIYEIGDAPGHRDFISGMIAGASSADFAVLVVDSSQNNFERGFLE 299
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMDSLN 515
NGQTREHA L LG+ +++V VNK+D ++
Sbjct: 300 NGQTREHAYLLRALGISEIVVSVNKLDLMS 329
Score = 43.6 bits (98), Expect = 3e-05
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +1
Query: 118 LIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAXR 240
++++ G I+ R+++K EA GKGSF YAW+LD + R
Sbjct: 197 IMFELGEINSRSMQKLHNEAANSGKGSFSYAWLLDTTEEER 237
Score = 35.9 bits (79), Expect = 0.005
Identities = 18/34 (52%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
Frame = +2
Query: 521 YSEPRFEEIKKEVSSY-IKKIGYNPAAVAFVPIS 619
+SE RF+EIK VS + IK +G+ + V FVPIS
Sbjct: 330 WSEDRFQEIKNIVSDFLIKMVGFKTSNVHFVPIS 363
Score = 31.5 bits (68), Expect = 0.11
Identities = 13/23 (56%), Positives = 17/23 (73%)
Frame = +2
Query: 53 KTHINIVVIGHVDSGKSTTTGHL 121
K +++VV GHVDSGKST G +
Sbjct: 175 KPVVHLVVTGHVDSGKSTMLGRI 197
>SPBC9B6.04c |tuf1||mitochondrial translation elongation factor
EF-Tu Tuf1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 439
Score = 70.9 bits (166), Expect = 1e-13
Identities = 37/87 (42%), Positives = 54/87 (62%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G I A ++ET+ + +D GH D+IKNMITG + D A+++V+A G+
Sbjct: 101 GITISSAHVEYETANRHYAHVDCPGHADYIKNMITGAATMDGAIIVVSATDGQMP----- 155
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMD 506
QTREH LLA +GVKQ++V +NK+D
Sbjct: 156 --QTREHLLLARQVGVKQIVVYINKVD 180
Score = 33.9 bits (74), Expect = 0.020
Identities = 13/26 (50%), Positives = 19/26 (73%)
Frame = +2
Query: 47 KEKTHINIVVIGHVDSGKSTTTGHLS 124
++K H+NI IGHVD GK+T T ++
Sbjct: 49 RKKPHVNIGTIGHVDHGKTTLTAAIT 74
>SPBC17G9.09 |tif213||translation initiation factor eIF2 gamma
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 33.9 bits (74), Expect = 0.020
Identities = 19/71 (26%), Positives = 33/71 (46%)
Frame = +3
Query: 294 YVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGV 473
+V+ +D GH + M+ G + D A+L++A QT EH + +
Sbjct: 109 HVSFVDCPGHDILMATMLNGAAVMDAALLLIAGNES------CPQPQTSEHLAAIEIMQL 162
Query: 474 KQLIVGVNKMD 506
K +I+ NK+D
Sbjct: 163 KHIIILQNKVD 173
Score = 25.8 bits (54), Expect = 5.4
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +2
Query: 35 PKMGKEKTHINIVVIGHVDSGKSTTTGHLS 124
P + + INI IGHV GKST +S
Sbjct: 15 PAIISRQATINIGTIGHVAHGKSTVVKAIS 44
>SPBC1306.01c ||SPBC409.22c|translation elongation factor
G|Schizosaccharomyces pombe|chr 2|||Manual
Length = 770
Score = 31.1 bits (67), Expect = 0.14
Identities = 20/57 (35%), Positives = 28/57 (49%)
Frame = +3
Query: 276 FETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREH 446
FE S Y + IID GH DF + D AVL++ A +G I+ + Q R +
Sbjct: 141 FEKS-YNINIIDTPGHIDFTIEVERALRVLDGAVLVLCAVSGVQSQTITVDRQMRRY 196
>SPCP31B10.07 |eft202||translation elongation factor 2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHL 121
MGK N+ VI HVD GKST T L
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSL 39
>SPAC513.01c |eft201|eft2-1, etf2, SPAPYUK71.04c|translation
elongation factor 2 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 842
Score = 30.3 bits (65), Expect = 0.25
Identities = 15/27 (55%), Positives = 16/27 (59%)
Frame = +2
Query: 41 MGKEKTHINIVVIGHVDSGKSTTTGHL 121
MGK N+ VI HVD GKST T L
Sbjct: 13 MGKPSNVRNMSVIAHVDHGKSTLTDSL 39
>SPAC19A8.03 |||phosphatidylinositol-3-phosphatase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 559
Score = 28.7 bits (61), Expect = 0.77
Identities = 14/42 (33%), Positives = 23/42 (54%)
Frame = -1
Query: 341 VLDEISVSXSINDGNIVLASFELPESNIDVIPSSRSAFSLSN 216
V D + SIN N++ A + +P + + +PSS +F L N
Sbjct: 87 VYDTLQELMSINSINMLYAFYYMPSGDEEKLPSSWKSFLLEN 128
>SPCC553.08c |||GTPase Ria1 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/74 (29%), Positives = 36/74 (48%)
Frame = +3
Query: 291 YYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLG 470
Y + +ID+ GH DF + + + D A ++V A G I+ Q A+
Sbjct: 94 YLINLIDSPGHVDFSSEVSSASRLCDGAFVLVDAVEGVCSQTITVLRQ-------AWIDR 146
Query: 471 VKQLIVGVNKMDSL 512
+K ++V +NKMD L
Sbjct: 147 IKVILV-INKMDRL 159
>SPBC660.10 |||translation elongation factor G|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 813
Score = 27.9 bits (59), Expect = 1.3
Identities = 26/87 (29%), Positives = 38/87 (43%)
Frame = +3
Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
G I+ A F + +ID GH DF + + D AV I+ + AG+
Sbjct: 78 GITINSAAISFTWRNQRINLIDTPGHADFTFEVERSVAVLDGAVAII-----DGSAGV-- 130
Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMD 506
QT+ A G+ ++I VNKMD
Sbjct: 131 EAQTKVVWKQATKRGIPKVIF-VNKMD 156
Score = 25.0 bits (52), Expect = 9.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 65 NIVVIGHVDSGKSTTT 112
N+ +I H+D+GK+T T
Sbjct: 30 NVGIIAHIDAGKTTLT 45
>SPAC1B3.04c |||mitochondrial GTPase Guf1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 646
Score = 27.5 bits (58), Expect = 1.8
Identities = 11/45 (24%), Positives = 22/45 (48%)
Frame = +3
Query: 267 LWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTG 401
++ + Y + +ID GH DF ++ + + +L+V A G
Sbjct: 116 IYYYHGQSYLLNLIDTPGHVDFRAEVMHSLAACEGCILLVDASQG 160
>SPBC1703.13c |||inorganic phosphate transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 311
Score = 26.6 bits (56), Expect = 3.1
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = -2
Query: 181 PGPPSRTSRWYVCQYHHICR*VTSGGGLA 95
P PP +T + Y QY+ +C T GG LA
Sbjct: 8 PAPPKKTLQLYTPQYYGLC---TLGGLLA 33
>SPAC17H9.10c |ddb1||damaged DNA binding protein Ddb1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1072
Score = 26.6 bits (56), Expect = 3.1
Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 4/97 (4%)
Frame = +3
Query: 366 DCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRK 545
D L V+ G +NGQ EH+L LGV +I + DS + + K
Sbjct: 581 DGGTLYVSTNNGYVLMFNFQNGQVIEHSLRRNQLGVAPII--LKHFDSKEKNAIFALGEK 638
Query: 546 SRRKYPHTSRRLAT----TQLLSLSCPFLDGTGDNML 644
+ Y + + + T T++L++S G NML
Sbjct: 639 PQLMYYESDKLVITPLSCTEMLNISSYVNPSLGVNML 675
>SPAC22F8.08 |||COPII vesicle coat protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 926
Score = 26.2 bits (55), Expect = 4.1
Identities = 26/79 (32%), Positives = 36/79 (45%)
Frame = +3
Query: 384 VAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTVSPDLRKSRRKYP 563
VA GT E GI NG E+A+ A +I V++ ++H + KSRR+YP
Sbjct: 47 VAEGTAE---GIVSNG---EYAVGAMGAAPTNIIGSVDQQPPVSHTS-----HKSRRQYP 95
Query: 564 HTSRRLATTQLLSLSCPFL 620
L T S + P L
Sbjct: 96 AEVFELTNTLAASPAPPSL 114
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 26.2 bits (55), Expect = 4.1
Identities = 11/28 (39%), Positives = 15/28 (53%)
Frame = +3
Query: 303 IIDAXGHRDFIKNMITGTSQADCAVLIV 386
IID GH F GTS + A+L++
Sbjct: 553 IIDTPGHESFTNLRSRGTSLCNIAILVI 580
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 26.2 bits (55), Expect = 4.1
Identities = 17/60 (28%), Positives = 28/60 (46%)
Frame = -1
Query: 314 SINDGNIVLASFELPESNIDVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVRLSIP 135
S++ + L S+ P S + + A ++YL+ PL S S S + +R SIP
Sbjct: 305 SVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSASRHTALRTSIP 364
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 26.2 bits (55), Expect = 4.1
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = -3
Query: 147 FVNTTTFVDK*PVVVDLPEST 85
FVNTTT V+K P +++ P ++
Sbjct: 517 FVNTTTDVNKLPSIIEFPAAS 537
>SPCC4G3.09c |gyp3||GTPase activating protein
Gyp3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 635
Score = 26.2 bits (55), Expect = 4.1
Identities = 29/125 (23%), Positives = 52/125 (41%)
Frame = -1
Query: 506 IHFVYSYDELFDTEGESEQGMLTGLTVLRDTSFEFTGTGSYDEHSAISLRGSCDHVLDEI 327
IHF S + ++ E + + D + + +Y + SL +H LD +
Sbjct: 28 IHFGSSEQDKTPSDYELDDVLDLYNDTTEDDADDADDVNNYIMSPSSSLSSESEHALDAL 87
Query: 326 SVSXSINDGNIVLASFELPESNIDVIPSSRSAFSLSNTQAYLKDPLPISWASFSNFSMVR 147
V + NI+ E + PS+ AF+ + AYL++P+ S + + +
Sbjct: 88 -VYPIYSHHNIL--EHENNSDYASITPSNHPAFT---SCAYLQNPVVDSNNEYESKFRLS 141
Query: 146 LSIPP 132
L IPP
Sbjct: 142 LEIPP 146
>SPBC24C6.08c |||vesicle coat protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 367
Score = 25.4 bits (53), Expect = 7.2
Identities = 9/30 (30%), Positives = 18/30 (60%)
Frame = +3
Query: 522 TVSPDLRKSRRKYPHTSRRLATTQLLSLSC 611
+ +PD+ ++PHT +R +T + L + C
Sbjct: 145 STNPDVLYMSSQHPHTQQRYSTLKRLMVRC 174
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,148
Number of Sequences: 5004
Number of extensions: 53313
Number of successful extensions: 207
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 180
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 293780908
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -