Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0332
         (650 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)             111   6e-25
SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)           99   3e-21
SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)                 76   2e-14
SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)                55   4e-08
SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.47 
SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)              30   1.9  
SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.3  
SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)                       29   4.3  
SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.7  
SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)                    28   7.6  

>SB_50386| Best HMM Match : GTP_EFTU (HMM E-Value=1.6e-09)
          Length = 123

 Score =  111 bits (266), Expect = 6e-25
 Identities = 52/95 (54%), Positives = 68/95 (71%), Gaps = 2/95 (2%)
 Frame = +3

Query: 255 IDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNGQ 434
           +D+ L +F+T    +T++DA GH+DFI NMITG +QAD A+L+V A TGEFEAG    GQ
Sbjct: 1   MDVGLTRFQTKNKVITLMDAPGHKDFIPNMITGAAQADVAILVVDAITGEFEAGFESGGQ 60

Query: 435 TREHALLAFTLGVKQLIVGVNKMDS--LNHHTVSP 533
           TREHA+L  +LGV QLIV +NK+D   L +H   P
Sbjct: 61  TREHAILVRSLGVTQLIVAINKLDMVVLGYHRGKP 95


>SB_8918| Best HMM Match : GTP_EFTU (HMM E-Value=1.09301e-43)
          Length = 547

 Score = 99.1 bits (236), Expect = 3e-21
 Identities = 43/87 (49%), Positives = 61/87 (70%)
 Frame = +3

Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISK 425
           G  +++    F+T   + T++DA GH+ F+ NMI+G +QAD  VL+++A  GEFE G  +
Sbjct: 207 GNTVEVGRAAFDTDTKHFTLLDAPGHKSFVPNMISGATQADLGVLVISARKGEFETGFER 266

Query: 426 NGQTREHALLAFTLGVKQLIVGVNKMD 506
            GQTREHA+LA T GVK L++ VNKMD
Sbjct: 267 GGQTREHAMLAKTAGVKHLVILVNKMD 293



 Score = 40.7 bits (91), Expect = 0.001
 Identities = 16/40 (40%), Positives = 27/40 (67%)
 Frame = +1

Query: 124 YKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVLDKLKAXRE 243
           Y  G +DKRT+EK+E+EA+E  + ++  +W LD  +  R+
Sbjct: 166 YLTGQVDKRTLEKYEREAKEKNRETWYLSWALDTNQEERD 205



 Score = 33.9 bits (74), Expect = 0.12
 Identities = 11/24 (45%), Positives = 21/24 (87%)
 Frame = +2

Query: 521 YSEPRFEEIKKEVSSYIKKIGYNP 592
           ++E R+EEIK +++ ++KK+G+NP
Sbjct: 299 WNEERYEEIKVKLTPFLKKVGFNP 322


>SB_51711| Best HMM Match : GTP_EFTU_D3 (HMM E-Value=0)
          Length = 322

 Score = 76.2 bits (179), Expect = 2e-14
 Identities = 34/39 (87%), Positives = 35/39 (89%)
 Frame = +3

Query: 246 GYHIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQ 362
           G  IDIALWKFET KYYVT+IDA GHRDFIKNMITGTSQ
Sbjct: 22  GITIDIALWKFETLKYYVTVIDAPGHRDFIKNMITGTSQ 60



 Score = 44.4 bits (100), Expect = 8e-05
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +1

Query: 184 MGKGSFKYAWVLDKLKAXRE 243
           MGKGSFKYAWVLDKLKA RE
Sbjct: 1   MGKGSFKYAWVLDKLKAERE 20


>SB_18076| Best HMM Match : GTP_EFTU (HMM E-Value=0.018)
          Length = 106

 Score = 55.2 bits (127), Expect = 4e-08
 Identities = 25/27 (92%), Positives = 25/27 (92%)
 Frame = +2

Query: 41  MGKEKTHINIVVIGHVDSGKSTTTGHL 121
           M KEK HINIVVIGHVDSGKSTTTGHL
Sbjct: 1   MPKEKIHINIVVIGHVDSGKSTTTGHL 27



 Score = 47.6 bits (108), Expect = 9e-06
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +1

Query: 118 LIYKCGGIDKRTIEKFEKEAQEM 186
           LIYKCGGIDKRTIEKFEKE+ E+
Sbjct: 27  LIYKCGGIDKRTIEKFEKESSEV 49


>SB_50050| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 545

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 27/85 (31%), Positives = 39/85 (45%)
 Frame = +3

Query: 252 HIDIALWKFETSKYYVTIIDAXGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGISKNG 431
           HI   L K  + +  +T ID  GH  F      G +  D  VL+VAA  G      ++  
Sbjct: 64  HIGAFLVKLPSGEK-ITFIDTPGHAAFNSMRARGANVTDIVVLVVAADDGV----KTQTV 118

Query: 432 QTREHALLAFTLGVKQLIVGVNKMD 506
           ++  HA+ A       LIV +NK+D
Sbjct: 119 ESIRHAMHAKV----PLIVAINKID 139


>SB_22769| Best HMM Match : GTP_EFTU (HMM E-Value=3.9e-07)
          Length = 203

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 14/30 (46%), Positives = 20/30 (66%)
 Frame = +2

Query: 38  KMGKEKTHINIVVIGHVDSGKSTTTGHLST 127
           K+ +   + NI V+GHVDSGK++    LST
Sbjct: 28  KIKERILNFNIGVLGHVDSGKTSLAKALST 57


>SB_2439| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 951

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 13/43 (30%), Positives = 24/43 (55%)
 Frame = +2

Query: 461 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 589
           H   + + RR ++N   +   + P+FE++K + +S  KKI  N
Sbjct: 109 HETTEPSVRRCQRNSVRDIDAAWPKFEKLKSQFNSNSKKISMN 151


>SB_21189| Best HMM Match : PCI (HMM E-Value=8.2)
          Length = 125

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 5/58 (8%)
 Frame = +2

Query: 431 SNP*ACLARFHPRC-----QTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 589
           +N  A L RF   C     ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 25  NNEFAALKRFLKNCMHETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 82


>SB_37907| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 93

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = +2

Query: 461 HPRCQTAHRRSKQNGFTEPPYSEPRFEEIKKEVSSYIKKIGYN 589
           H   ++A RR ++N   +   + P+F+ +K + S   KKI  N
Sbjct: 8   HETTESAVRRCQRNSVMDIDAAWPKFQRLKSQFSINSKKISMN 50


>SB_25339| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1049

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 14/61 (22%), Positives = 31/61 (50%)
 Frame = +3

Query: 348 TGTSQADCAVLIVAAGTGEFEAGISKNGQTREHALLAFTLGVKQLIVGVNKMDSLNHHTV 527
           TGT+  D  + +     G+F++ ++ N  +    LLA  +G+ +   G+    +++ HT 
Sbjct: 790 TGTNVLDSIISLTPGKIGQFDSSVTMNEDSTSE-LLASIMGLTKTTSGLLVSQTVSTHTT 848

Query: 528 S 530
           +
Sbjct: 849 A 849


>SB_44740| Best HMM Match : GTP_EFTU (HMM E-Value=0)
          Length = 833

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = +2

Query: 41  MGKEKTHINIVVIGHVDSGKSTTTGHLSTNVVVL 142
           M K+    N+ VI HVD GKST T  L +   ++
Sbjct: 12  MDKKLNIRNMSVIAHVDHGKSTLTDSLVSKAGII 45


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,183,323
Number of Sequences: 59808
Number of extensions: 395886
Number of successful extensions: 1154
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1018
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1153
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1657237625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)