Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0330
         (742 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 pro...    30   0.017
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    26   0.37 
AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxida...    22   4.5  
AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    22   6.0  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    22   6.0  

>DQ659250-1|ABG47448.1| 2700|Tribolium castaneum chitinase 10 protein.
          Length = 2700

 Score = 30.3 bits (65), Expect = 0.017
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 161  NRKCFREGESRRAPSAGPMLPVAAVTRRTSR 253
            N +C  +  S  APS  PM+P   VT  TSR
Sbjct: 2281 NTECHPDASSTMAPSTTPMVPDKPVTTTTSR 2311


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 25.8 bits (54), Expect = 0.37
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 1/40 (2%)
 Frame = -2

Query: 126 PSGT-PSMSPQKGSPASQPYTLNRN*TVAAVSSRRNSPHT 10
           PSG  P ++P  G P S PYT+  N   + +SS    P++
Sbjct: 110 PSGNVPPLTPSPGPP-SHPYTVISNGYSSPMSSGSYDPYS 148


>AY884064-1|AAX84205.1|  683|Tribolium castaneum pro-phenol oxidase
           subunit 2 protein.
          Length = 683

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 241 THLAHVPHTYPSSVTLNSE 297
           THL H P TY   +T+N++
Sbjct: 475 THLQHQPFTY--KITVNNQ 491


>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 210 DPCCR*RR*LDAPRACSTYLPIISYLKFGAPLLLSTAN 323
           D C R  R  + PR C  +  +  Y   GA   + T N
Sbjct: 106 DECARACREGEPPRICYYHFTLELYTVLGAACQVCTPN 143


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +3

Query: 210 DPCCR*RR*LDAPRACSTYLPIISYLKFGAPLLLSTAN 323
           D C R  R  + PR C  +  +  Y   GA   + T N
Sbjct: 106 DECARACREGEPPRICYYHFTLELYTVLGAACQVCTPN 143


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 174,111
Number of Sequences: 336
Number of extensions: 3567
Number of successful extensions: 10
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19884055
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)