Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0330
         (742 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    28   1.2  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    27   2.8  
SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces ...    26   6.5  

>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 13/36 (36%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -3

Query: 608  SHFRNSAGVNFTSQPLTVPS--QSXRQTVTLFPHEP 507
            SHF +  G++  +QPL +PS   S R+ +++F   P
Sbjct: 1052 SHFLDPHGISLYNQPLLLPSNDDSVRRAISVFDRIP 1087


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 27.1 bits (57), Expect = 2.8
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = -3

Query: 263 CGTCARCV*SPPLPAAWVQRMALSCSRLHGNTSCLFVLSL 144
           CGT         +   W+  +AL+ SR +GNT  L  L L
Sbjct: 173 CGTQVFVGSGRSIDCQWMDSVALNLSRYYGNTEALSSLPL 212


>SPAC1F5.11c |||phosphatidylinositol kinase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 3655

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 3/45 (6%)
 Frame = -3

Query: 221  AAWVQRMALSCSRLHGN---TSCLFVLSLAVLRAVQAGLHQCHHR 96
            A+W +R   SCS++        C F      L  +  G  +C H+
Sbjct: 2091 ASWTERRLQSCSQIEVTLPCVECFFKYKKDALHTLLPGFMRCFHK 2135


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,037,043
Number of Sequences: 5004
Number of extensions: 61034
Number of successful extensions: 164
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 164
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 351258950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)