Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e96h0330
(742 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_1074 - 33904518-33904697,33904886-33904985,33905085-339053... 31 1.3
07_01_0532 - 3935661-3935720,3936314-3936412,3937804-3937908,393... 29 2.9
03_02_0493 - 8866685-8866888,8866989-8867059,8867143-8867416,886... 29 3.9
04_01_0357 + 4667796-4667901,4668722-4668816 28 6.8
07_01_0975 + 8223269-8224354 28 9.0
03_06_0337 + 33224333-33224479,33224603-33224663,33224740-332247... 28 9.0
02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184 28 9.0
02_04_0193 - 20801959-20802583,20803372-20803448,20803530-208036... 28 9.0
01_07_0057 - 40790530-40790805 28 9.0
>02_05_1074 -
33904518-33904697,33904886-33904985,33905085-33905311,
33905511-33908384,33908467-33908643,33908786-33909008,
33909727-33909806,33910657-33910817,33910892-33910937,
33911129-33911251,33911730-33911804,33911920-33912120
Length = 1488
Score = 30.7 bits (66), Expect = 1.3
Identities = 16/34 (47%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -2
Query: 261 WNMRE-VRLVTAATGSMGPADGALLLSPSRKHFL 163
W R VR V A + S+GP D + L P KHFL
Sbjct: 839 WVKRSAVRFVVACSESIGPVDTFVYLFPHLKHFL 872
>07_01_0532 -
3935661-3935720,3936314-3936412,3937804-3937908,
3939474-3939666,3940434-3940513,3940607-3940904,
3941139-3941431
Length = 375
Score = 29.5 bits (63), Expect = 2.9
Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
Frame = +2
Query: 218 LPVAAVTRRTSRMFH-IPTHHQ 280
+P+A V R+TSR H +PT HQ
Sbjct: 277 MPIATVNRKTSRAIHSVPTWHQ 298
>03_02_0493 -
8866685-8866888,8866989-8867059,8867143-8867416,
8867666-8868036,8868127-8868482,8868558-8868630,
8869307-8869412,8869667-8869760,8870616-8870680,
8871655-8871927
Length = 628
Score = 29.1 bits (62), Expect = 3.9
Identities = 13/32 (40%), Positives = 19/32 (59%)
Frame = -1
Query: 538 DKLSLYFHTNHDSLVAFVLKGSNYIMGTARID 443
DK S T H SLV+ ++G+NY + R+D
Sbjct: 269 DKTSGQSPTKHSSLVSKYIRGNNYASSSQRLD 300
>04_01_0357 + 4667796-4667901,4668722-4668816
Length = 66
Score = 28.3 bits (60), Expect = 6.8
Identities = 11/15 (73%), Positives = 12/15 (80%)
Frame = +1
Query: 214 HAAGSGGD*THLAHV 258
HAAGSGGD H+ HV
Sbjct: 29 HAAGSGGDLGHMGHV 43
>07_01_0975 + 8223269-8224354
Length = 361
Score = 27.9 bits (59), Expect = 9.0
Identities = 18/55 (32%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
Frame = -2
Query: 234 TAATGSMGPADGALLLSPSRKHFLFICVEPGSTPR-CPSGTPSMSPQKGSPASQP 73
T GS G + SPS P +P P+G+P+ P G PAS P
Sbjct: 235 TGYGGSSGSPSSSPSSSPSSSPSGSPSSSPSGSPSGSPAGSPAGGPTAGGPASGP 289
>03_06_0337 +
33224333-33224479,33224603-33224663,33224740-33224776,
33225237-33225367,33225447-33225590,33225686-33225776,
33225973-33226106,33226234-33226373,33227328-33227426,
33227520-33227602,33227690-33227744,33227826-33227937,
33228274-33228766,33228881-33229094,33229203-33229273,
33229733-33229901,33229991-33230120,33230556-33230968,
33231059-33231262
Length = 975
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/37 (32%), Positives = 17/37 (45%)
Frame = +2
Query: 119 PLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVA 229
PLG + G NR+ F +G R++ LP A
Sbjct: 814 PLGDQSATDGPDANNRRAFNKGNKRKSHDRSSKLPYA 850
>02_05_0112 - 25931775-25932078,25932554-25932732,25934033-25935184
Length = 544
Score = 27.9 bits (59), Expect = 9.0
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
Frame = +2
Query: 194 RAPSAGPMLPVAAVT-RRTSRMFHIPTHHQLP*IRSPAAVEH 316
RAP P A + RR R FH+P H P PA+ EH
Sbjct: 37 RAPRPLAAAPAPAASFRRRDRWFHLPLHAPPP----PASAEH 74
>02_04_0193 -
20801959-20802583,20803372-20803448,20803530-20803646,
20804147-20804250,20804359-20804428,20804547-20804644,
20804747-20804840,20805269-20805359,20805453-20805545,
20805635-20805960,20806162-20806641
Length = 724
Score = 27.9 bits (59), Expect = 9.0
Identities = 16/52 (30%), Positives = 23/52 (44%)
Frame = -3
Query: 650 WLLFCWARSKPGSGSHFRNSAGVNFTSQPLTVPSQSXRQTVTLFPHEPRQSR 495
WL + S+P +G R+ + S PLT P Q T + P P +R
Sbjct: 554 WLHHLISYSRPSNGGRSRSPSRSPVRSPPLTPPHQVPTTTSSSSPPPPAVAR 605
>01_07_0057 - 40790530-40790805
Length = 91
Score = 27.9 bits (59), Expect = 9.0
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 493 LRDCRGSCGNRVTVCLXDCDGTVSGCEVKLT 585
L C CG++VT CL C G G T
Sbjct: 37 LTKCVSGCGSKVTSCLLGCYGGGGGAAAAAT 67
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,162,673
Number of Sequences: 37544
Number of extensions: 451733
Number of successful extensions: 1400
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1327
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1398
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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