Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e96h0330
         (742 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)              33   0.24 
SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)              32   0.56 
SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   2.3  
SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)                     30   2.3  
SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)                29   3.0  
SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)           29   5.2  
SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   6.9  
SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)                   28   6.9  
SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   6.9  
SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)                    28   6.9  
SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  
SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)                 28   9.1  
SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.1  

>SB_23862| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 3112

 Score = 33.1 bits (72), Expect = 0.24
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 3/56 (5%)
 Frame = +1

Query: 424 SSG*KRHQCGQFPLYNWTLSKQKLRDCRG-SCGNRVTVCL--XDCDGTVSGCEVKL 582
           S G K   C   PLY+WT++        G SC +  T CL    C  +   C V L
Sbjct: 130 SCGAKNRTCTLQPLYDWTIASNNSVTLSGSSCNSGETYCLATSSCKNSSQSCNVPL 185


>SB_46216| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 136

 Score = 31.9 bits (69), Expect = 0.56
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = -2

Query: 456 LPALMSFSTTRTHPKAIKQKFRMWKQIKLNHSE 358
           LP  M   T +T PK + Q FR +KQ++  H +
Sbjct: 40  LPPNMRLQTPKTGPKGVIQDFRRYKQLETEHKK 72


>SB_31319| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1186

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 12/34 (35%), Positives = 17/34 (50%)
 Frame = +1

Query: 502  CRGSCGNRVTVCLXDCDGTVSGCEVKLTPAEXRK 603
            C G   +R+ +CL D    V GCEV   P   ++
Sbjct: 1099 CGGGSQHRIVMCLNDQGKRVGGCEVSKKPLHWQR 1132


>SB_28540| Best HMM Match : Stig1 (HMM E-Value=2.6)
          Length = 465

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -1

Query: 721 KAHPLVTR*GKRRSNVPSASWFTAGFSSAGRDRSPARAV 605
           KA+ +VT     R+++PS  W+   FS A  DR P   V
Sbjct: 342 KANQVVTYSSATRNDIPSKGWYR--FSGAAGDRMPTHVV 378


>SB_16839| Best HMM Match : zf-GRF (HMM E-Value=3.7e-15)
          Length = 333

 Score = 29.5 bits (63), Expect = 3.0
 Identities = 13/36 (36%), Positives = 24/36 (66%)
 Frame = -2

Query: 192 LLSPSRKHFLFICVEPGSTPRCPSGTPSMSPQKGSP 85
           L++P  K+F++ CV PG++ R P+  PS++    +P
Sbjct: 207 LVAPITKYFIYGCVTPGAS-RTPTLVPSINGGNTTP 241


>SB_26078| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=0.45)
          Length = 671

 Score = 28.7 bits (61), Expect = 5.2
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -2

Query: 153 VEPGSTPRCPSGTPSMSPQKGSPASQPYT 67
           + P S P  PS +P+ +   GSP  QP++
Sbjct: 77  LNPTSDPEIPSSSPNDNHLPGSPGEQPFS 105


>SB_57006| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 604

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 GESRRAPSAGPMLPVAAVTRRTSRMFHIPTH 274
           G   R+PS   + P+ A+ +R S +FH+  H
Sbjct: 481 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 511


>SB_21540| Best HMM Match : fn3 (HMM E-Value=4.3e-30)
          Length = 634

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 337 SATELLAVLNSSGAPNLR*LMMGRYVEHARGASSHRRYRQH 215
           +A  LL  +N++  PNL+   + ++ ++ R    H R++QH
Sbjct: 62  TAPALLDAMNAAKIPNLQITTVTQHQQNQRHHQQHHRHQQH 102


>SB_2459| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1741

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 17/41 (41%), Positives = 22/41 (53%)
 Frame = -2

Query: 240 LVTAATGSMGPADGALLLSPSRKHFLFICVEPGSTPRCPSG 118
           LV A T ++ PAD +L+ SPSR      CV    T  C +G
Sbjct: 751 LVFAWTYNVNPADASLIASPSRS-----CVHGNVTLTCTAG 786


>SB_43092| Best HMM Match : 7tm_1 (HMM E-Value=0.23)
          Length = 417

 Score = 28.3 bits (60), Expect = 6.9
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +2

Query: 182 GESRRAPSAGPMLPVAAVTRRTSRMFHIPTH 274
           G   R+PS   + P+ A+ +R S +FH+  H
Sbjct: 294 GRKSRSPSILVVRPINAIRKRASSVFHLHDH 324


>SB_36553| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 684

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/74 (28%), Positives = 33/74 (44%)
 Frame = -3

Query: 233 PPLPAAWVQRMALSCSRLHGNTSCLFVLSLAVLRAVQAGLHQCHHRRDLQLHSHTH*IEI 54
           P     WV +++ S    HG  S    LSL  ++  QAG++QC    D++  + T  + I
Sbjct: 34  PDPNVTWVNKLSGSAVA-HGTGSA--TLSLLKIQRHQAGVYQCQATNDVRRGAITQDVTI 90

Query: 53  ERWQP*AAEEIHHT 12
               P     I +T
Sbjct: 91  NVQYPPKITPIQNT 104


>SB_27122| Best HMM Match : I-set (HMM E-Value=1.9e-39)
          Length = 378

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 21/60 (35%), Positives = 29/60 (48%), Gaps = 1/60 (1%)
 Frame = -3

Query: 230 PLP-AAWVQRMALSCSRLHGNTSCLFVLSLAVLRAVQAGLHQCHHRRDLQLHSHTH*IEI 54
           P P   WV + + S    HG  S    LSL  ++  QAG++QC    D++    TH I I
Sbjct: 38  PAPNVTWVNKTSGS-PVAHGTGSA--TLSLLKIQQHQAGVYQCQATNDVRRGPITHDITI 94


>SB_16788| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1468

 Score = 27.9 bits (59), Expect = 9.1
 Identities = 20/62 (32%), Positives = 27/62 (43%)
 Frame = +2

Query: 74  GCEAGDPFCGDIDGVPLGQRGVLPGSTQINRKCFREGESRRAPSAGPMLPVAAVTRRTSR 253
           GCE+G   CG  DG+ +   GV          CFR+    + P+  P  P     R+T R
Sbjct: 493 GCESGLT-CGK-DGMVIAWDGV---------GCFRDLRPSKTPTTEPQRPETTTKRKTQR 541

Query: 254 MF 259
            F
Sbjct: 542 RF 543


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,810,616
Number of Sequences: 59808
Number of extensions: 510004
Number of successful extensions: 2316
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 2196
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2315
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1998111622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)